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Items: 1 to 20 of 60

1.

Antibiotic-Induced Shifts in Fecal Microbiota Density and Composition during Hematopoietic Stem Cell Transplantation.

Morjaria S, Schluter J, Taylor BP, Littmann ER, Carter RA, Fontana E, Peled JU, van den Brink MRM, Xavier JB, Taur Y.

Infect Immun. 2019 Aug 21;87(9). pii: e00206-19. doi: 10.1128/IAI.00206-19. Print 2019 Sep.

2.

The Ultimate Guide to Bacterial Swarming: An Experimental Model to Study the Evolution of Cooperative Behavior.

Yan J, Monaco H, Xavier JB.

Annu Rev Microbiol. 2019 Sep 8;73:293-312. doi: 10.1146/annurev-micro-020518-120033. Epub 2019 Jun 10.

PMID:
31180806
3.

Intestinal Bile Acids Induce a Morphotype Switch in Vancomycin-Resistant Enterococcus that Facilitates Intestinal Colonization.

McKenney PT, Yan J, Vaubourgeix J, Becattini S, Lampen N, Motzer A, Larson PJ, Dannaoui D, Fujisawa S, Xavier JB, Pamer EG.

Cell Host Microbe. 2019 May 8;25(5):695-705.e5. doi: 10.1016/j.chom.2019.03.008. Epub 2019 Apr 25.

PMID:
31031170
4.

Diversification and Evolution of Vancomycin-Resistant Enterococcus faecium during Intestinal Domination.

Dubin KA, Mathur D, McKenney PT, Taylor BP, Littmann ER, Peled JU, van den Brink MRM, Taur Y, Pamer EG, Xavier JB.

Infect Immun. 2019 Jun 20;87(7). pii: e00102-19. doi: 10.1128/IAI.00102-19. Print 2019 Jul.

5.

The impact of early-life sub-therapeutic antibiotic treatment (STAT) on excessive weight is robust despite transfer of intestinal microbes.

Schulfer AF, Schluter J, Zhang Y, Brown Q, Pathmasiri W, McRitchie S, Sumner S, Li H, Xavier JB, Blaser MJ.

ISME J. 2019 May;13(5):1280-1292. doi: 10.1038/s41396-019-0349-4. Epub 2019 Jan 16.

6.

Reconstitution of the gut microbiota of antibiotic-treated patients by autologous fecal microbiota transplant.

Taur Y, Coyte K, Schluter J, Robilotti E, Figueroa C, Gjonbalaj M, Littmann ER, Ling L, Miller L, Gyaltshen Y, Fontana E, Morjaria S, Gyurkocza B, Perales MA, Castro-Malaspina H, Tamari R, Ponce D, Koehne G, Barker J, Jakubowski A, Papadopoulos E, Dahi P, Sauter C, Shaffer B, Young JW, Peled J, Meagher RC, Jenq RR, van den Brink MRM, Giralt SA, Pamer EG, Xavier JB.

Sci Transl Med. 2018 Sep 26;10(460). pii: eaap9489. doi: 10.1126/scitranslmed.aap9489.

7.

The Vibrio cholerae type VI secretion system can modulate host intestinal mechanics to displace gut bacterial symbionts.

Logan SL, Thomas J, Yan J, Baker RP, Shields DS, Xavier JB, Hammer BK, Parthasarathy R.

Proc Natl Acad Sci U S A. 2018 Apr 17;115(16):E3779-E3787. doi: 10.1073/pnas.1720133115. Epub 2018 Apr 2.

8.

Bow-tie signaling in c-di-GMP: Machine learning in a simple biochemical network.

Yan J, Deforet M, Boyle KE, Rahman R, Liang R, Okegbe C, Dietrich LEP, Qiu W, Xavier JB.

PLoS Comput Biol. 2017 Aug 2;13(8):e1005677. doi: 10.1371/journal.pcbi.1005677. eCollection 2017 Aug.

9.

Metabolism and the Evolution of Social Behavior.

Boyle KE, Monaco HT, Deforet M, Yan J, Wang Z, Rhee K, Xavier JB.

Mol Biol Evol. 2017 Sep 1;34(9):2367-2379. doi: 10.1093/molbev/msx174.

10.

Image-Based Measurement of H2O2 Reaction-Diffusion in Wounded Zebrafish Larvae.

Jelcic M, Enyedi B, Xavier JB, Niethammer P.

Biophys J. 2017 May 9;112(9):2011-2018. doi: 10.1016/j.bpj.2017.03.021.

11.

Metabolic origins of spatial organization in the tumor microenvironment.

Carmona-Fontaine C, Deforet M, Akkari L, Thompson CB, Joyce JA, Xavier JB.

Proc Natl Acad Sci U S A. 2017 Mar 14;114(11):2934-2939. doi: 10.1073/pnas.1700600114. Epub 2017 Feb 28.

12.

Microenvironment-derived factors driving metastatic plasticity in melanoma.

Kim IS, Heilmann S, Kansler ER, Zhang Y, Zimmer M, Ratnakumar K, Bowman RL, Simon-Vermot T, Fennell M, Garippa R, Lu L, Lee W, Hollmann T, Xavier JB, White RM.

Nat Commun. 2017 Feb 9;8:14343. doi: 10.1038/ncomms14343.

13.

Sociomicrobiology and Pathogenic Bacteria.

Xavier JB.

Microbiol Spectr. 2016 Jun;4(3). doi: 10.1128/microbiolspec.VMBF-0019-2015. Review.

14.

Human symbionts inject and neutralize antibacterial toxins to persist in the gut.

Wexler AG, Bao Y, Whitney JC, Bobay LM, Xavier JB, Schofield WB, Barry NA, Russell AB, Tran BQ, Goo YA, Goodlett DR, Ochman H, Mougous JD, Goodman AL.

Proc Natl Acad Sci U S A. 2016 Mar 29;113(13):3639-44. doi: 10.1073/pnas.1525637113. Epub 2016 Mar 8.

15.

Facultative control of matrix production optimizes competitive fitness in Pseudomonas aeruginosa PA14 biofilm models.

Madsen JS, Lin YC, Squyres GR, Price-Whelan A, de Santiago Torio A, Song A, Cornell WC, Sørensen SJ, Xavier JB, Dietrich LE.

Appl Environ Microbiol. 2015 Dec;81(24):8414-26. doi: 10.1128/AEM.02628-15. Epub 2015 Oct 2.

16.

Cell-Size Homeostasis and the Incremental Rule in a Bacterial Pathogen.

Deforet M, van Ditmarsch D, Xavier JB.

Biophys J. 2015 Aug 4;109(3):521-8. doi: 10.1016/j.bpj.2015.07.002.

17.

Integration of Metabolic and Quorum Sensing Signals Governing the Decision to Cooperate in a Bacterial Social Trait.

Boyle KE, Monaco H, van Ditmarsch D, Deforet M, Xavier JB.

PLoS Comput Biol. 2015 Jun 23;11(5):e1004279. doi: 10.1371/journal.pcbi.1004279. eCollection 2015 May.

18.

Precision microbiome reconstitution restores bile acid mediated resistance to Clostridium difficile.

Buffie CG, Bucci V, Stein RR, McKenney PT, Ling L, Gobourne A, No D, Liu H, Kinnebrew M, Viale A, Littmann E, van den Brink MR, Jenq RR, Taur Y, Sander C, Cross JR, Toussaint NC, Xavier JB, Pamer EG.

Nature. 2015 Jan 8;517(7533):205-8. doi: 10.1038/nature13828. Epub 2014 Oct 22.

19.

Turning ecology and evolution against cancer.

Korolev KS, Xavier JB, Gore J.

Nat Rev Cancer. 2014 May;14(5):371-80. doi: 10.1038/nrc3712. Epub 2014 Apr 17. Review.

PMID:
24739582
20.

Towards predictive models of the human gut microbiome.

Bucci V, Xavier JB.

J Mol Biol. 2014 Nov 25;426(23):3907-16. doi: 10.1016/j.jmb.2014.03.017. Epub 2014 Apr 12. Review.

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