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Items: 15

1.

MaGuS: a tool for quality assessment and scaffolding of genome assemblies with Whole Genome Profiling™ Data.

Madoui MA, Dossat C, d'Agata L, van Oeveren J, van der Vossen E, Aury JM.

BMC Bioinformatics. 2016 Mar 3;17:115. doi: 10.1186/s12859-016-0969-x.

2.

Towards recommendations for metadata and data handling in plant phenotyping.

Krajewski P, Chen D, Ćwiek H, van Dijk AD, Fiorani F, Kersey P, Klukas C, Lange M, Markiewicz A, Nap JP, van Oeveren J, Pommier C, Scholz U, van Schriek M, Usadel B, Weise S.

J Exp Bot. 2015 Sep;66(18):5417-27. doi: 10.1093/jxb/erv271. Epub 2015 Jun 4.

3.

Whole-genome profiling and shotgun sequencing delivers an anchored, gene-decorated, physical map assembly of bread wheat chromosome 6A.

Poursarebani N, Nussbaumer T, Simková H, Safář J, Witsenboer H, van Oeveren J, Doležel J, Mayer KF, Stein N, Schnurbusch T.

Plant J. 2014 Jul;79(2):334-47. doi: 10.1111/tpj.12550. Epub 2014 Jun 19.

4.

Whole genome profiling physical map and ancestral annotation of tobacco Hicks Broadleaf.

Sierro N, van Oeveren J, van Eijk MJ, Martin F, Stormo KE, Peitsch MC, Ivanov NV.

Plant J. 2013 Sep;75(5):880-9. doi: 10.1111/tpj.12247. Epub 2013 Jun 26.

5.

Whole Genome Profiling provides a robust framework for physical mapping and sequencing in the highly complex and repetitive wheat genome.

Philippe R, Choulet F, Paux E, van Oeveren J, Tang J, Wittenberg AH, Janssen A, van Eijk MJ, Stormo K, Alberti A, Wincker P, Akhunov E, van der Vossen E, Feuillet C.

BMC Genomics. 2012 Jan 30;13:47. doi: 10.1186/1471-2164-13-47.

6.

Sequence-based physical mapping of complex genomes by whole genome profiling.

van Oeveren J, de Ruiter M, Jesse T, van der Poel H, Tang J, Yalcin F, Janssen A, Volpin H, Stormo KE, Bogden R, van Eijk MJ, Prins M.

Genome Res. 2011 Apr;21(4):618-25. doi: 10.1101/gr.112094.110. Epub 2011 Feb 1.

7.

Mining SNPs from DNA sequence data; computational approaches to SNP discovery and analysis.

van Oeveren J, Janssen A.

Methods Mol Biol. 2009;578:73-91. doi: 10.1007/978-1-60327-411-1_4.

PMID:
19768587
8.

High-throughput detection of induced mutations and natural variation using KeyPoint technology.

Rigola D, van Oeveren J, Janssen A, Bonné A, Schneiders H, van der Poel HJ, van Orsouw NJ, Hogers RC, de Both MT, van Eijk MJ.

PLoS One. 2009;4(3):e4761. doi: 10.1371/journal.pone.0004761. Epub 2009 Mar 13.

9.

Complexity reduction of polymorphic sequences (CRoPS): a novel approach for large-scale polymorphism discovery in complex genomes.

van Orsouw NJ, Hogers RC, Janssen A, Yalcin F, Snoeijers S, Verstege E, Schneiders H, van der Poel H, van Oeveren J, Verstegen H, van Eijk MJ.

PLoS One. 2007 Nov 14;2(11):e1172.

10.

Quantitative trait locus (QTL) isogenic recombinant analysis: a method for high-resolution mapping of QTL within a single population.

Peleman JD, Wye C, Zethof J, Sørensen AP, Verbakel H, van Oeveren J, Gerats T, van der Voort JR.

Genetics. 2005 Nov;171(3):1341-52. Epub 2005 Aug 5.

11.

Quantitative comparison of cDNA-AFLP, microarrays, and GeneChip expression data in Saccharomyces cerevisiae.

Reijans M, Lascaris R, Groeneger AO, Wittenberg A, Wesselink E, van Oeveren J, de Wit E, Boorsma A, Voetdijk B, van der Spek H, Grivell LA, Simons G.

Genomics. 2003 Dec;82(6):606-18.

PMID:
14611802
12.

Apoptosis: pathophysiology of programmed cell death.

Bosman FT, Visser BC, van Oeveren J.

Pathol Res Pract. 1996 Jul;192(7):676-83. Review.

PMID:
8880868
13.

[The determination of hydrogen gas in the expired air for the diagnosis of carbohydrate resorption disorders].

Dolmans WM, van Oeveren JP, van Tongeren JH.

Ned Tijdschr Geneeskd. 1984 Apr 7;128(14):670-5. Dutch. No abstract available.

PMID:
6717636
14.

New principle for estimation of hydrogen in expired air.

van der Klei-van Moorsel JM, Douwes AC, van Oeveren JP.

Eur J Pediatr. 1984 Feb;141(4):221-4.

PMID:
6734671
15.

Use of combusted natural gas to cultivate the anaerobic bacterial flora from the cecum contents of mice.

Koopman JP, van Oeveren JP, Janssen FG.

Appl Microbiol. 1973 Oct;26(4):584-8.

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