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Items: 1 to 20 of 103

1.

Sequanix: A Dynamic Graphical Interface for Snakemake Workflows.

Desvillechabrol D, Legendre R, Rioualen C, Bouchier C, van Helden J, Kennedy S, Cokelaer T.

Bioinformatics. 2018 Jan 19. doi: 10.1093/bioinformatics/bty034. [Epub ahead of print]

PMID:
29361152
2.

Lipocalin-2 in Fructose-Induced Fatty Liver Disease.

Lambertz J, Berger T, Mak TW, van Helden J, Weiskirchen R.

Front Physiol. 2017 Nov 28;8:964. doi: 10.3389/fphys.2017.00964. eCollection 2017.

3.

Coordinated response of the Desulfovibrio desulfuricans 27774 transcriptome to nitrate, nitrite and nitric oxide.

Cadby IT, Faulkner M, Cheneby J, Long J, van Helden J, Dolla A, Cole JA.

Sci Rep. 2017 Nov 24;7(1):16228. doi: 10.1038/s41598-017-16403-4.

4.

Non-equivalence of anti-Müllerian hormone automated assays-clinical implications for use as a companion diagnostic for individualised gonadotrophin dosing.

Iliodromiti S, Salje B, Dewailly D, Fairburn C, Fanchin R, Fleming R, Li HWR, Lukaszuk K, Ng EHY, Pigny P, Tadros T, van Helden J, Weiskirchen R, Nelson SM.

Hum Reprod. 2017 Aug 1;32(8):1710-1715. doi: 10.1093/humrep/dex219.

PMID:
28854583
5.

Transcriptional Profiling of Midguts Prepared from Trypanosoma/T. congolense-Positive Glossina palpalis palpalis Collected from Two Distinct Cameroonian Foci: Coordinated Signatures of the Midguts' Remodeling As T. congolense-Supportive Niches.

Tsagmo Ngoune JM, Njiokou F, Loriod B, Kame-Ngasse G, Fernandez-Nunez N, Rioualen C, van Helden J, Geiger A.

Front Immunol. 2017 Jul 28;8:876. doi: 10.3389/fimmu.2017.00876. eCollection 2017.

6.

RSAT matrix-clustering: dynamic exploration and redundancy reduction of transcription factor binding motif collections.

Castro-Mondragon JA, Jaeger S, Thieffry D, Thomas-Chollier M, van Helden J.

Nucleic Acids Res. 2017 Jul 27;45(13):e119. doi: 10.1093/nar/gkx314.

7.

Genome-wide characterization of mammalian promoters with distal enhancer functions.

Dao LTM, Galindo-Albarrán AO, Castro-Mondragon JA, Andrieu-Soler C, Medina-Rivera A, Souaid C, Charbonnier G, Griffon A, Vanhille L, Stephen T, Alomairi J, Martin D, Torres M, Fernandez N, Soler E, van Helden J, Puthier D, Spicuglia S.

Nat Genet. 2017 Jul;49(7):1073-1081. doi: 10.1038/ng.3884. Epub 2017 Jun 5.

PMID:
28581502
8.

RSAT::Plants: Motif Discovery in ChIP-Seq Peaks of Plant Genomes.

Castro-Mondragon JA, Rioualen C, Contreras-Moreira B, van Helden J.

Methods Mol Biol. 2016;1482:297-322. doi: 10.1007/978-1-4939-6396-6_19.

PMID:
27557775
9.

RSAT::Plants: Motif Discovery Within Clusters of Upstream Sequences in Plant Genomes.

Contreras-Moreira B, Castro-Mondragon JA, Rioualen C, Cantalapiedra CP, van Helden J.

Methods Mol Biol. 2016;1482:279-95. doi: 10.1007/978-1-4939-6396-6_18.

PMID:
27557774
10.

Confidence intervals are no salvation from the alleged fickleness of the P value.

van Helden J.

Nat Methods. 2016 Jul 28;13(8):605-6. doi: 10.1038/nmeth.3932. No abstract available.

PMID:
27467719
11.

Deciphering the adaptation strategies of Desulfovibrio piezophilus to hydrostatic pressure through metabolic and transcriptional analyses.

Amrani A, van Helden J, Bergon A, Aouane A, Ben Hania W, Tamburini C, Loriod B, Imbert J, Ollivier B, Pradel N, Dolla A.

Environ Microbiol Rep. 2016 Aug;8(4):520-6. doi: 10.1111/1758-2229.12427.

PMID:
27264199
12.

Sensitive CH<sub>4</sub> detection applying quantum cascade laser based optical feedback cavity-enhanced absorption spectroscopy.

Lang N, Macherius U, Wiese M, Zimmermann H, Röpcke J, van Helden JH.

Opt Express. 2016 Mar 21;24(6):A536-43. doi: 10.1364/OE.24.00A536.

PMID:
27136874
13.

[Diagnostic value of the quantitative HBsAg determination in hepatitis B infections].

van Helden J, Weiskirchen R.

Z Gastroenterol. 2016 Apr;54(4):319-26. doi: 10.1055/s-0042-100286. Epub 2016 Apr 7. Review. German.

PMID:
27056461
14.

The chromatin environment shapes DNA replication origin organization and defines origin classes.

Cayrou C, Ballester B, Peiffer I, Fenouil R, Coulombe P, Andrau JC, van Helden J, Méchali M.

Genome Res. 2015 Dec;25(12):1873-85. doi: 10.1101/gr.192799.115. Epub 2015 Nov 11.

15.

Analytical evaluation of the novel soluble fms-like tyrosine kinase 1 and placental growth factor assays for the diagnosis of preeclampsia.

van Helden J, Weiskirchen R.

Clin Biochem. 2015 Nov;48(16-17):1113-9. doi: 10.1016/j.clinbiochem.2015.06.020. Epub 2015 Jun 27.

PMID:
26129879
16.

Performance of the two new fully automated anti-Müllerian hormone immunoassays compared with the clinical standard assay.

van Helden J, Weiskirchen R.

Hum Reprod. 2015 Aug;30(8):1918-26. doi: 10.1093/humrep/dev127. Epub 2015 Jun 20.

PMID:
26093541
17.

RSAT 2015: Regulatory Sequence Analysis Tools.

Medina-Rivera A, Defrance M, Sand O, Herrmann C, Castro-Mondragon JA, Delerce J, Jaeger S, Blanchet C, Vincens P, Caron C, Staines DM, Contreras-Moreira B, Artufel M, Charbonnier-Khamvongsa L, Hernandez C, Thieffry D, Thomas-Chollier M, van Helden J.

Nucleic Acids Res. 2015 Jul 1;43(W1):W50-6. doi: 10.1093/nar/gkv362. Epub 2015 Apr 22.

18.

Performance evaluation of a fully automated immunoassay for the detection of human growth hormone on the Elecsys immunoassay system.

Van Helden J, Hermsen D, Von Ahsen N, Bidlingmaier M.

Clin Lab. 2014;60(10):1641-51.

PMID:
25651709
19.

Integrative analysis of public ChIP-seq experiments reveals a complex multi-cell regulatory landscape.

Griffon A, Barbier Q, Dalino J, van Helden J, Spicuglia S, Ballester B.

Nucleic Acids Res. 2015 Feb 27;43(4):e27. doi: 10.1093/nar/gku1280. Epub 2014 Dec 3.

20.

[Hepatitis C diagnostics: clinical evaluation of the HCV-core antigen determination].

van Helden J, Weiskirchen R.

Z Gastroenterol. 2014 Oct;52(10):1164-70. doi: 10.1055/s-0034-1366618. Epub 2014 Oct 14. German.

PMID:
25313628

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