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Items: 1 to 20 of 38

1.

Study of Simple Immunohistochemical Cytocolorimetric Assay Application for More Accurate Assessment of Prognosis in Patients with Pituitary Adenomas.

Nikitin PV, Ryzhova MV, Shishkina LV, Shugay SV, Zubova IV.

World Neurosurg. 2019 Feb;122:e1047-e1051. doi: 10.1016/j.wneu.2018.10.225. Epub 2018 Nov 9.

PMID:
30415039
2.

Comparative Analysis of B-Cell Receptor Repertoires Induced by Live Yellow Fever Vaccine in Young and Middle-Age Donors.

Davydov AN, Obraztsova AS, Lebedin MY, Turchaninova MA, Staroverov DB, Merzlyak EM, Sharonov GV, Kladova O, Shugay M, Britanova OV, Chudakov DM.

Front Immunol. 2018 Oct 9;9:2309. doi: 10.3389/fimmu.2018.02309. eCollection 2018.

3.

High-resolution repertoire analysis reveals a major bystander activation of Tfh and Tfr cells.

Ritvo PG, Saadawi A, Barennes P, Quiniou V, Chaara W, El Soufi K, Bonnet B, Six A, Shugay M, Mariotti-Ferrandiz E, Klatzmann D.

Proc Natl Acad Sci U S A. 2018 Sep 18;115(38):9604-9609. doi: 10.1073/pnas.1808594115. Epub 2018 Aug 29.

PMID:
30158170
4.

Exploring the pre-immune landscape of antigen-specific T cells.

Pogorelyy MV, Fedorova AD, McLaren JE, Ladell K, Bagaev DV, Eliseev AV, Mikelov AI, Koneva AE, Zvyagin IV, Price DA, Chudakov DM, Shugay M.

Genome Med. 2018 Aug 25;10(1):68. doi: 10.1186/s13073-018-0577-7.

5.

[Li-Fraumeni syndrome in a patient with multiple anaplastic oligodendrogliomas of the brain (a case report and literature review)].

Potapov AA, Abdilatipov AA, Okhlopkov VA, Gavrilov AG, Zakharova NE, Goryaynov SA, Kobyakov GL, Absalyamova OV, Kravchuk AD, Kulikov AS, Shugay SV, Nikitin PV, Batalov AI, Shelygin YA, Lyubchenko LN, Aliev MD, Spallone A.

Zh Vopr Neirokhir Im N N Burdenko. 2018;82(4):87-96. doi: 10.17116/neiro201882487. Russian.

PMID:
30137042
6.

The Changing Landscape of Naive T Cell Receptor Repertoire With Human Aging.

Egorov ES, Kasatskaya SA, Zubov VN, Izraelson M, Nakonechnaya TO, Staroverov DB, Angius A, Cucca F, Mamedov IZ, Rosati E, Franke A, Shugay M, Pogorelyy MV, Chudakov DM, Britanova OV.

Front Immunol. 2018 Jul 24;9:1618. doi: 10.3389/fimmu.2018.01618. eCollection 2018.

7.

CD8+ T cells with characteristic T cell receptor beta motif are detected in blood and expanded in synovial fluid of ankylosing spondylitis patients.

Komech EA, Pogorelyy MV, Egorov ES, Britanova OV, Rebrikov DV, Bochkova AG, Shmidt EI, Shostak NA, Shugay M, Lukyanov S, Mamedov IZ, Lebedev YB, Chudakov DM, Zvyagin IV.

Rheumatology (Oxford). 2018 Jun 1;57(6):1097-1104. doi: 10.1093/rheumatology/kex517.

PMID:
29481668
8.

[The spectrum of genetic alterations in anaplastic gliomas: and anaplastic oligodendrogliomas].

Ryzhova MV, Shaykhaev EG, Kazarova MV, Telysheva EN, Shishkina LV, Shibaeva IV, Shugay SV, Voronina EI, Snigireva GP.

Zh Vopr Neirokhir Im N N Burdenko. 2017;81(6):26-31. doi: 10.17116/neiro201781626-31. Russian.

9.

Comparative analysis of murine T-cell receptor repertoires.

Izraelson M, Nakonechnaya TO, Moltedo B, Egorov ES, Kasatskaya SA, Putintseva EV, Mamedov IZ, Staroverov DB, Shemiakina II, Zakharova MY, Davydov AN, Bolotin DA, Shugay M, Chudakov DM, Rudensky AY, Britanova OV.

Immunology. 2018 Feb;153(2):133-144. doi: 10.1111/imm.12857. Epub 2017 Nov 27. Review.

10.

Antigen receptor repertoire profiling from RNA-seq data.

Bolotin DA, Poslavsky S, Davydov AN, Frenkel FE, Fanchi L, Zolotareva OI, Hemmers S, Putintseva EV, Obraztsova AS, Shugay M, Ataullakhanov RI, Rudensky AY, Schumacher TN, Chudakov DM.

Nat Biotechnol. 2017 Oct 11;35(10):908-911. doi: 10.1038/nbt.3979. No abstract available.

11.

VDJdb: a curated database of T-cell receptor sequences with known antigen specificity.

Shugay M, Bagaev DV, Zvyagin IV, Vroomans RM, Crawford JC, Dolton G, Komech EA, Sycheva AL, Koneva AE, Egorov ES, Eliseev AV, Van Dyk E, Dash P, Attaf M, Rius C, Ladell K, McLaren JE, Matthews KK, Clemens EB, Douek DC, Luciani F, van Baarle D, Kedzierska K, Kesmir C, Thomas PG, Price DA, Sewell AK, Chudakov DM.

Nucleic Acids Res. 2018 Jan 4;46(D1):D419-D427. doi: 10.1093/nar/gkx760.

12.

Application of nonsense-mediated primer exclusion (NOPE) for preparation of unique molecular barcoded libraries.

Shagin DA, Turchaninova MA, Shagina IA, Shugay M, Zaretsky AR, Zueva OI, Bolotin DA, Lukyanov S, Chudakov DM.

BMC Genomics. 2017 Jun 5;18(1):440. doi: 10.1186/s12864-017-3815-2.

13.

A high-throughput assay for quantitative measurement of PCR errors.

Shagin DA, Shagina IA, Zaretsky AR, Barsova EV, Kelmanson IV, Lukyanov S, Chudakov DM, Shugay M.

Sci Rep. 2017 Jun 2;7(1):2718. doi: 10.1038/s41598-017-02727-8.

14.

MAGERI: Computational pipeline for molecular-barcoded targeted resequencing.

Shugay M, Zaretsky AR, Shagin DA, Shagina IA, Volchenkov IA, Shelenkov AA, Lebedin MY, Bagaev DV, Lukyanov S, Chudakov DM.

PLoS Comput Biol. 2017 May 5;13(5):e1005480. doi: 10.1371/journal.pcbi.1005480. eCollection 2017 May.

15.

Tracking T-cell immune reconstitution after TCRαβ/CD19-depleted hematopoietic cells transplantation in children.

Zvyagin IV, Mamedov IZ, Tatarinova OV, Komech EA, Kurnikova EE, Boyakova EV, Brilliantova V, Shelikhova LN, Balashov DN, Shugay M, Sycheva AL, Kasatskaya SA, Lebedev YB, Maschan AA, Maschan MA, Chudakov DM.

Leukemia. 2017 May;31(5):1145-1153. doi: 10.1038/leu.2016.321. Epub 2016 Nov 4.

PMID:
27811849
16.

High-quality full-length immunoglobulin profiling with unique molecular barcoding.

Turchaninova MA, Davydov A, Britanova OV, Shugay M, Bikos V, Egorov ES, Kirgizova VI, Merzlyak EM, Staroverov DB, Bolotin DA, Mamedov IZ, Izraelson M, Logacheva MD, Kladova O, Plevova K, Pospisilova S, Chudakov DM.

Nat Protoc. 2016 Sep;11(9):1599-616. doi: 10.1038/nprot.2016.093. Epub 2016 Aug 4.

PMID:
27490633
17.

Single-cell analysis of glandular T cell receptors in Sjögren's syndrome.

Joachims ML, Leehan KM, Lawrence C, Pelikan RC, Moore JS, Pan Z, Rasmussen A, Radfar L, Lewis DM, Grundahl KM, Kelly JA, Wiley GB, Shugay M, Chudakov DM, Lessard CJ, Stone DU, Scofield RH, Montgomery CG, Sivils KL, Thompson LF, Farris AD.

JCI Insight. 2016 Jun 2;1(8). pii: e85609.

18.

VDJviz: a versatile browser for immunogenomics data.

Bagaev DV, Zvyagin IV, Putintseva EV, Izraelson M, Britanova OV, Chudakov DM, Shugay M.

BMC Genomics. 2016 Jun 13;17:453. doi: 10.1186/s12864-016-2799-7.

19.

Dynamics of Individual T Cell Repertoires: From Cord Blood to Centenarians.

Britanova OV, Shugay M, Merzlyak EM, Staroverov DB, Putintseva EV, Turchaninova MA, Mamedov IZ, Pogorelyy MV, Bolotin DA, Izraelson M, Davydov AN, Egorov ES, Kasatskaya SA, Rebrikov DV, Lukyanov S, Chudakov DM.

J Immunol. 2016 Jun 15;196(12):5005-13. doi: 10.4049/jimmunol.1600005. Epub 2016 May 13.

20.

VDJtools: Unifying Post-analysis of T Cell Receptor Repertoires.

Shugay M, Bagaev DV, Turchaninova MA, Bolotin DA, Britanova OV, Putintseva EV, Pogorelyy MV, Nazarov VI, Zvyagin IV, Kirgizova VI, Kirgizov KI, Skorobogatova EV, Chudakov DM.

PLoS Comput Biol. 2015 Nov 25;11(11):e1004503. doi: 10.1371/journal.pcbi.1004503. eCollection 2015 Nov.

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