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Items: 1 to 20 of 64


Transcriptomic response of breast cancer cells to anacardic acid.

Schultz DJ, Krishna A, Vittitow SL, Alizadeh-Rad N, Muluhngwi P, Rouchka EC, Klinge CM.

Sci Rep. 2018 May 23;8(1):8063. doi: 10.1038/s41598-018-26429-x.


Identification of G-quadruplex forming sequences in three manatee papillomaviruses.

Zahin M, Dean WL, Ghim SJ, Joh J, Gray RD, Khanal S, Bossart GD, Mignucci-Giannoni AA, Rouchka EC, Jenson AB, Trent JO, Chaires JB, Chariker JH.

PLoS One. 2018 Apr 9;13(4):e0195625. doi: 10.1371/journal.pone.0195625. eCollection 2018.


Yersinia pestis Targets the Host Endosome Recycling Pathway during the Biogenesis of the Yersinia-Containing Vacuole To Avoid Killing by Macrophages.

Connor MG, Pulsifer AR, Chung D, Rouchka EC, Ceresa BK, Lawrenz MB.

MBio. 2018 Feb 20;9(1). pii: e01800-17. doi: 10.1128/mBio.01800-17.


Transcriptome-wide identification of the RNA-binding landscape of the chromatin-associated protein PARP1 reveals functions in RNA biogenesis.

Melikishvili M, Chariker JH, Rouchka EC, Fondufe-Mittendorf YN.

Cell Discov. 2017 Nov 28;3:17043. doi: 10.1038/celldisc.2017.43. eCollection 2017.


Framework for reanalysis of publicly available Affymetrix® GeneChip® data sets based on functional regions of interest.

Saka E, Harrison BJ, West K, Petruska JC, Rouchka EC.

BMC Genomics. 2017 Dec 6;18(Suppl 10):875. doi: 10.1186/s12864-017-4266-5.


Leukotriene B4-receptor-1 mediated host response shapes gut microbiota and controls colon tumor progression.

Jala VR, Maturu P, Bodduluri SR, Krishnan E, Mathis S, Subbarao K, Wang M, Jenson AB, Proctor ML, Rouchka EC, Knight R, Haribabu B.

Oncoimmunology. 2017 Aug 10;6(12):e1361593. doi: 10.1080/2162402X.2017.1361593. eCollection 2017.


Pas de deux: An Intricate Dance of Anther Smut and Its Host.

San Toh S, Chen Z, Rouchka EC, Schultz DJ, Cuomo CA, Perlin MH.

G3 (Bethesda). 2018 Feb 2;8(2):505-518. doi: 10.1534/g3.117.300318.


Dietary copper-fructose interactions alter gut microbial activity in male rats.

Song M, Li X, Zhang X, Shi H, Vos MB, Wei X, Wang Y, Gao H, Rouchka EC, Yin X, Zhou Z, Prough RA, Cave MC, McClain CJ.

Am J Physiol Gastrointest Liver Physiol. 2018 Jan 1;314(1):G119-G130. doi: 10.1152/ajpgi.00378.2016. Epub 2017 Oct 12.


Genome-wide miRNA response to anacardic acid in breast cancer cells.

Schultz DJ, Muluhngwi P, Alizadeh-Rad N, Green MA, Rouchka EC, Waigel SJ, Klinge CM.

PLoS One. 2017 Sep 8;12(9):e0184471. doi: 10.1371/journal.pone.0184471. eCollection 2017.


Detecting and accounting for multiple sources of positional variance in peak list registration analysis and spin system grouping.

Smelter A, Rouchka EC, Moseley HNB.

J Biomol NMR. 2017 Aug;68(4):281-296. doi: 10.1007/s10858-017-0126-5. Epub 2017 Aug 16.


Identification of successful mentoring communities using network-based analysis of mentor-mentee relationships across Nobel laureates.

Chariker JH, Zhang Y, Pani JR, Rouchka EC.

Scientometrics. 2017;111(3):1733-1749. doi: 10.1007/s11192-017-2364-4. Epub 2017 Mar 27.


Next generation sequencing analysis of soy glyceollins and 17-β estradiol: Effects on transcript abundance in the female mouse brain.

Bamji SF, Rouchka E, Zhang Y, Li X, Kalbfleisch T, Corbitt C.

Mol Cell Endocrinol. 2018 Aug 15;471:15-21. doi: 10.1016/j.mce.2017.05.007. Epub 2017 May 5. Review.


A comparison of per sample global scaling and per gene normalization methods for differential expression analysis of RNA-seq data.

Li X, Brock GN, Rouchka EC, Cooper NGF, Wu D, O'Toole TE, Gill RS, Eteleeb AM, O'Brien L, Rai SN.

PLoS One. 2017 May 1;12(5):e0176185. doi: 10.1371/journal.pone.0176185. eCollection 2017.


Identification of a plasma metabolomic signature of thrombotic myocardial infarction that is distinct from non-thrombotic myocardial infarction and stable coronary artery disease.

DeFilippis AP, Trainor PJ, Hill BG, Amraotkar AR, Rai SN, Hirsch GA, Rouchka EC, Bhatnagar A.

PLoS One. 2017 Apr 17;12(4):e0175591. doi: 10.1371/journal.pone.0175591. eCollection 2017.


Systems characterization of differential plasma metabolome perturbations following thrombotic and non-thrombotic myocardial infarction.

Trainor PJ, Hill BG, Carlisle SM, Rouchka EC, Rai SN, Bhatnagar A, DeFilippis AP.

J Proteomics. 2017 May 8;160:38-46. doi: 10.1016/j.jprot.2017.03.014. Epub 2017 Mar 22.


Perspectives and expectations in structural bioinformatics of metalloproteins.

Yao S, Flight RM, Rouchka EC, Moseley HN.

Proteins. 2017 May;85(5):938-944. doi: 10.1002/prot.25263. Epub 2017 Mar 15.


Aberrant coordination geometries discovered in the most abundant metalloproteins.

Yao S, Flight RM, Rouchka EC, Moseley HN.

Proteins. 2017 May;85(5):885-907. doi: 10.1002/prot.25257. Epub 2017 Mar 7.


Regulation of miR-29b-1/a transcription and identification of target mRNAs in CHO-K1 cells.

Muluhngwi P, Richardson K, Napier J, Rouchka EC, Mott JL, Klinge CM.

Mol Cell Endocrinol. 2017 Mar 15;444:38-47. doi: 10.1016/j.mce.2017.01.044. Epub 2017 Jan 28.


Computational Analysis of G-Quadruplex Forming Sequences across Chromosomes Reveals High Density Patterns Near the Terminal Ends.

Chariker JH, Miller DM, Rouchka EC.

PLoS One. 2016 Oct 24;11(10):e0165101. doi: 10.1371/journal.pone.0165101. eCollection 2016.


Discovery of a Family of Genomic Sequences Which Interact Specifically with the c-MYC Promoter to Regulate c-MYC Expression.

Rezzoug F, Thomas SD, Rouchka EC, Miller DM.

PLoS One. 2016 Aug 23;11(8):e0161588. doi: 10.1371/journal.pone.0161588. eCollection 2016.

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