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Items: 17


A nonparametric Bayesian method of translating machine learning scores to probabilities in clinical decision support.

Connolly B, Cohen KB, Santel D, Bayram U, Pestian J.

BMC Bioinformatics. 2017 Aug 7;18(1):361. doi: 10.1186/s12859-017-1736-3.


Methodological Issues in Predicting Pediatric Epilepsy Surgery Candidates Through Natural Language Processing and Machine Learning.

Cohen KB, Glass B, Greiner HM, Holland-Bouley K, Standridge S, Arya R, Faist R, Morita D, Mangano F, Connolly B, Glauser T, Pestian J.

Biomed Inform Insights. 2016 May 22;8:11-8. doi: 10.4137/BII.S38308. eCollection 2016.


Long-term outcomes of generalized tonic-clonic seizures in a childhood absence epilepsy trial.

Shinnar S, Cnaan A, Hu F, Clark P, Dlugos D, Hirtz DG, Masur D, Mizrahi EM, Moshé SL, Glauser TA; Childhood Absence Epilepsy Study Group.

Neurology. 2015 Sep 29;85(13):1108-14. doi: 10.1212/WNL.0000000000001971. Epub 2015 Aug 26.


Assessing the similarity of surface linguistic features related to epilepsy across pediatric hospitals.

Connolly B, Matykiewicz P, Bretonnel Cohen K, Standridge SM, Glauser TA, Dlugos DJ, Koh S, Tham E, Pestian J.

J Am Med Inform Assoc. 2014 Sep-Oct;21(5):866-70. doi: 10.1136/amiajnl-2013-002601. Epub 2014 Apr 1.


Computational semantics in clinical text supplement.

Pestian JP.

Biomed Inform Insights. 2013 Jun 24;6(Suppl 1):1-2. doi: 10.4137/BII.S11868. Print 2013. No abstract available.


What's In a Note: Construction of a Suicide Note Corpus.

Pestian JP, Matykiewicz P, Linn-Gust M.

Biomed Inform Insights. 2012;5:1-6. doi: 10.4137/BII.S10213. Epub 2012 Nov 5.


Ethosuximide, valproic acid, and lamotrigine in childhood absence epilepsy: initial monotherapy outcomes at 12 months.

Glauser TA, Cnaan A, Shinnar S, Hirtz DG, Dlugos D, Masur D, Clark PO, Adamson PC; Childhood Absence Epilepsy Study Team.

Epilepsia. 2013 Jan;54(1):141-55. doi: 10.1111/epi.12028. Epub 2012 Nov 21.


Selecting anti-epileptic drugs: a pediatric epileptologist's view, a computer's view.

Pestian J, Matykiewicz P, Holland-Bouley K, Standridge S, Spencer M, Glauser T.

Acta Neurol Scand. 2013 Mar;127(3):208-15. doi: 10.1111/ane.12002. Epub 2012 Sep 23.


Introductory editorial.

Pestian JP.

Biomed Inform Insights. 2012;5(Suppl. 1):1. doi: 10.4137/BII.S9297. Epub 2012 Jan 30. No abstract available.


Sentiment Analysis of Suicide Notes: A Shared Task.

Pestian JP, Matykiewicz P, Linn-Gust M, South B, Uzuner O, Wiebe J, Cohen KB, Hurdle J, Brew C.

Biomed Inform Insights. 2012 Jan 30;5(Suppl 1):3-16.


Evaluating the state of the art in coreference resolution for electronic medical records.

Uzuner O, Bodnari A, Shen S, Forbush T, Pestian J, South BR.

J Am Med Inform Assoc. 2012 Sep-Oct;19(5):786-91. doi: 10.1136/amiajnl-2011-000784. Epub 2012 Feb 24. Review.


Suicide Note Classification Using Natural Language Processing: A Content Analysis.

Pestian J, Nasrallah H, Matykiewicz P, Bennett A, Leenaars A.

Biomed Inform Insights. 2010 Aug 4;2010(3):19-28.


Personalizing Drug Selection Using Advanced Clinical Decision Support.

Pestian J, Spencer M, Matykiewicz P, Zhang K, Vinks AA, Glauser T.

Biomed Inform Insights. 2009 Jun 23;2:19-29.


Themes in biomedical natural language processing: BioNLP08.

Demner-Fushman D, Ananiadou S, Cohen KB, Pestian J, Tsujii J, Webber B.

BMC Bioinformatics. 2008 Nov 19;9 Suppl 11:S1. doi: 10.1186/1471-2105-9-S11-S1. No abstract available.


Neurolinguistic approach to natural language processing with applications to medical text analysis.

Duch W, Matykiewicz P, Pestian J.

Neural Netw. 2008 Dec;21(10):1500-10. doi: 10.1016/j.neunet.2008.05.008. Epub 2008 Jun 7.


Unambiguous concept mapping in radiology reports: graphs of consistent concepts.

Matykiewicz P, Pestian J, Duch W, Johnson N.

AMIA Annu Symp Proc. 2006:1024. No abstract available.


Detection and visualization of compositionally similar cis-regulatory element clusters in orthologous and coordinately controlled genes.

Jegga AG, Sherwood SP, Carman JW, Pinski AT, Phillips JL, Pestian JP, Aronow BJ.

Genome Res. 2002 Sep;12(9):1408-17.

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