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Items: 7

1.

Targeted single molecule mutation detection with massively parallel sequencing.

Gregory MT, Bertout JA, Ericson NG, Taylor SD, Mukherjee R, Robins HS, Drescher CW, Bielas JH.

Nucleic Acids Res. 2016 Feb 18;44(3):e22. doi: 10.1093/nar/gkv915. Epub 2015 Sep 17.

2.

CMV reactivation drives posttransplant T-cell reconstitution and results in defects in the underlying TCR╬▓ repertoire.

Suessmuth Y, Mukherjee R, Watkins B, Koura DT, Finstermeier K, Desmarais C, Stempora L, Horan JT, Langston A, Qayed M, Khoury HJ, Grizzle A, Cheeseman JA, Conger JA, Robertson J, Garrett A, Kirk AD, Waller EK, Blazar BR, Mehta AK, Robins HS, Kean LS.

Blood. 2015 Jun 18;125(25):3835-50. doi: 10.1182/blood-2015-03-631853. Epub 2015 Apr 7.

3.

Correlated evolution of positions within mammalian cis elements.

Mukherjee R, Evans P, Singh LN, Hannenhalli S.

PLoS One. 2013;8(2):e55521. doi: 10.1371/journal.pone.0055521. Epub 2013 Feb 8.

4.

Antiviral effects of autologous CD4 T cells genetically modified with a conditionally replicating lentiviral vector expressing long antisense to HIV.

Tebas P, Stein D, Binder-Scholl G, Mukherjee R, Brady T, Rebello T, Humeau L, Kalos M, Papasavvas E, Montaner LJ, Schullery D, Shaheen F, Brennan AL, Zheng Z, Cotte J, Slepushkin V, Veloso E, Mackley A, Hwang WT, Aberra F, Zhan J, Boyer J, Collman RG, Bushman FD, Levine BL, June CH.

Blood. 2013 Feb 28;121(9):1524-33. doi: 10.1182/blood-2012-07-447250. Epub 2012 Dec 20. Erratum in: Blood. 2014 Jul 24;124(4):663.

5.

Dynamic regulation of HIV-1 mRNA populations analyzed by single-molecule enrichment and long-read sequencing.

Ocwieja KE, Sherrill-Mix S, Mukherjee R, Custers-Allen R, David P, Brown M, Wang S, Link DR, Olson J, Travers K, Schadt E, Bushman FD.

Nucleic Acids Res. 2012 Nov 1;40(20):10345-55. doi: 10.1093/nar/gks753. Epub 2012 Aug 25.

6.

Switching between raltegravir resistance pathways analyzed by deep sequencing.

Mukherjee R, Jensen ST, Male F, Bittinger K, Hodinka RL, Miller MD, Bushman FD.

AIDS. 2011 Oct 23;25(16):1951-9. doi: 10.1097/QAD.0b013e32834b34de.

7.

HIV sequence variation associated with env antisense adoptive T-cell therapy in the hNSG mouse model.

Mukherjee R, Plesa G, Sherrill-Mix S, Richardson MW, Riley JL, Bushman FD.

Mol Ther. 2010 Apr;18(4):803-11. doi: 10.1038/mt.2009.316. Epub 2010 Jan 26.

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