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Items: 1 to 20 of 138

1.

Nano LC-MS using capillary columns enables accurate quantification of modified ribonucleosides at low femtomol levels.

Sarin LP, Kienast SD, Leufken J, Ross RL, Dziergowska A, Debiec K, Sochacka E, Limbach PA, Fufezan C, Drexler HCA, Leidel SA.

RNA. 2018 Jul 16. pii: rna.065482.117. doi: 10.1261/rna.065482.117. [Epub ahead of print]

2.

Evolutionary insights into Trm112-methyltransferase holoenzymes involved in translation between archaea and eukaryotes.

van Tran N, Muller L, Ross RL, Lestini R, Létoquart J, Ulryck N, Limbach PA, de Crécy-Lagard V, Cianférani S, Graille M.

Nucleic Acids Res. 2018 Jul 13. doi: 10.1093/nar/gky638. [Epub ahead of print]

PMID:
30010922
3.

Differentiating Positional Isomers of Nucleoside Modifications by Higher-Energy Collisional Dissociation Mass Spectrometry (HCD MS).

Jora M, Burns AP, Ross RL, Lobue PA, Zhao R, Palumbo CM, Beal PA, Addepalli B, Limbach PA.

J Am Soc Mass Spectrom. 2018 Aug;29(8):1745-1756. doi: 10.1007/s13361-018-1999-6. Epub 2018 Jun 12.

PMID:
29949056
4.

A metastable rRNA junction essential for bacterial 30S biogenesis.

Sharma IM, Rappé MC, Addepalli B, Grabow WW, Zhuang Z, Abeysirigunawardena SC, Limbach PA, Jaeger L, Woodson SA.

Nucleic Acids Res. 2018 Jun 1;46(10):5182-5194. doi: 10.1093/nar/gky120.

5.

Directed Evolution of Heterologous tRNAs Leads to Reduced Dependence on Post-transcriptional Modifications.

Baldridge KC, Jora M, Maranhao AC, Quick MM, Addepalli B, Brodbelt JS, Ellington AD, Limbach PA, Contreras LM.

ACS Synth Biol. 2018 May 18;7(5):1315-1327. doi: 10.1021/acssynbio.7b00421. Epub 2018 Apr 25.

PMID:
29694026
6.

The Effects of Ultraviolet Radiation on Nucleoside Modifications in RNA.

Sun C, Jora M, Solivio B, Limbach PA, Addepalli B.

ACS Chem Biol. 2018 Mar 16;13(3):567-572. doi: 10.1021/acschembio.7b00898. Epub 2018 Feb 5.

PMID:
29400945
7.

Selective terminal methylation of a tRNA wobble base.

Masuda I, Takase R, Matsubara R, Paulines MJ, Gamper H, Limbach PA, Hou YM.

Nucleic Acids Res. 2018 Apr 20;46(7):e37. doi: 10.1093/nar/gky013.

8.

MODOMICS: a database of RNA modification pathways. 2017 update.

Boccaletto P, Machnicka MA, Purta E, Piatkowski P, Baginski B, Wirecki TK, de Crécy-Lagard V, Ross R, Limbach PA, Kotter A, Helm M, Bujnicki JM.

Nucleic Acids Res. 2018 Jan 4;46(D1):D303-D307. doi: 10.1093/nar/gkx1030.

9.

RNAModMapper: RNA Modification Mapping Software for Analysis of Liquid Chromatography Tandem Mass Spectrometry Data.

Yu N, Lobue PA, Cao X, Limbach PA.

Anal Chem. 2017 Oct 17;89(20):10744-10752. doi: 10.1021/acs.analchem.7b01780. Epub 2017 Oct 5.

PMID:
28942636
10.

Retrograde nuclear transport from the cytoplasm is required for tRNATyr maturation in T. brucei.

Kessler AC, Kulkarni SS, Paulines MJ, Rubio MAT, Limbach PA, Paris Z, Alfonzo JD.

RNA Biol. 2018;15(4-5):528-536. doi: 10.1080/15476286.2017.1377878. Epub 2017 Nov 3.

PMID:
28901827
11.

Novel ribonuclease activity of cusativin from Cucumis sativus for mapping nucleoside modifications in RNA.

Addepalli B, Venus S, Thakur P, Limbach PA.

Anal Bioanal Chem. 2017 Sep;409(24):5645-5654. doi: 10.1007/s00216-017-0500-x. Epub 2017 Jul 20.

PMID:
28730304
12.

The t6A modification acts as a positive determinant for the anticodon nuclease PrrC, and is distinctively nonessential in Streptococcus mutans.

Bacusmo JM, Orsini SS, Hu J, DeMott M, Thiaville PC, Elfarash A, Paulines MJ, Rojas-Benítez D, Meineke B, Deutsch C, Iwata-Reuyl D, Limbach PA, Dedon PC, Rice KC, Shuman S, Crécy-Lagard V.

RNA Biol. 2018;15(4-5):508-517. doi: 10.1080/15476286.2017.1353861. Epub 2017 Sep 13.

PMID:
28726545
13.

Comparative Analysis of Ribonucleic Acid Digests (CARD) by Mass Spectrometry.

Paulines MJ, Limbach PA.

Methods Mol Biol. 2017;1562:19-32. doi: 10.1007/978-1-4939-6807-7_2.

PMID:
28349451
14.

Applications and Advantages of Stable Isotope Phosphate Labeling of RNA in Mass Spectrometry.

Borland K, Limbach PA.

Top Curr Chem (Cham). 2017 Apr;375(2):33. doi: 10.1007/s41061-017-0121-z. Epub 2017 Mar 11. Review.

PMID:
28285458
15.
16.

Editing and methylation at a single site by functionally interdependent activities.

Rubio MA, Gaston KW, McKenney KM, Fleming IM, Paris Z, Limbach PA, Alfonzo JD.

Nature. 2017 Feb 22;542(7642):494-497. doi: 10.1038/nature21396.

17.

Identification of a Novel Epoxyqueuosine Reductase Family by Comparative Genomics.

Zallot R, Ross R, Chen WH, Bruner SD, Limbach PA, de Crécy-Lagard V.

ACS Chem Biol. 2017 Mar 17;12(3):844-851. doi: 10.1021/acschembio.6b01100. Epub 2017 Feb 8.

18.

Stable Isotope Labeling for Improved Comparative Analysis of RNA Digests by Mass Spectrometry.

Paulines MJ, Limbach PA.

J Am Soc Mass Spectrom. 2017 Mar;28(3):551-561. doi: 10.1007/s13361-017-1593-3. Epub 2017 Jan 19.

PMID:
28105550
19.

Pseudouridine in the Anticodon of Escherichia coli tRNATyr(QΨA) Is Catalyzed by the Dual Specificity Enzyme RluF.

Addepalli B, Limbach PA.

J Biol Chem. 2016 Oct 14;291(42):22327-22337. Epub 2016 Aug 22.

20.

Going global: the new era of mapping modifications in RNA.

Limbach PA, Paulines MJ.

Wiley Interdiscip Rev RNA. 2017 Jan;8(1). doi: 10.1002/wrna.1367. Epub 2016 Jun 1. Review.

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