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Items: 1 to 20 of 102

1.

Root traits of European Vicia faba cultivars-Using machine learning to explore adaptations to agroclimatic conditions.

Zhao J, Sykacek P, Bodner G, Rewald B.

Plant Cell Environ. 2017 Aug 30. doi: 10.1111/pce.13062. [Epub ahead of print]

PMID:
28857245
2.

Transcriptomic changes in CHO cells after adaptation to suspension growth in protein-free medium analysed by a species-specific microarray.

Shridhar S, Klanert G, Auer N, Hernandez-Lopez I, Kańduła MM, Hackl M, Grillari J, Stralis-Pavese N, Kreil DP, Borth N.

J Biotechnol. 2017 Sep 10;257:13-21. doi: 10.1016/j.jbiotec.2017.03.012. Epub 2017 Mar 14.

3.
4.

MALDI TOF/TOF-Based Approach for the Identification of d- Amino Acids in Biologically Active Peptides and Proteins.

Koehbach J, Gruber CW, Becker C, Kreil DP, Jilek A.

J Proteome Res. 2016 May 6;15(5):1487-96. doi: 10.1021/acs.jproteome.5b01067. Epub 2016 Mar 25.

5.

Microarray profiling of preselected CHO host cell subclones identifies gene expression patterns associated with increased production capacity.

Harreither E, Hackl M, Pichler J, Shridhar S, Auer N, Łabaj PP, Scheideler M, Karbiener M, Grillari J, Kreil DP, Borth N.

Biotechnol J. 2015 Oct;10(10):1625-38. doi: 10.1002/biot.201400857. Epub 2015 Sep 23.

PMID:
26315449
6.

Experiences with workflows for automating data-intensive bioinformatics.

Spjuth O, Bongcam-Rudloff E, Hernández GC, Forer L, Giovacchini M, Guimera RV, Kallio A, Korpelainen E, Kańduła MM, Krachunov M, Kreil DP, Kulev O, Łabaj PP, Lampa S, Pireddu L, Schönherr S, Siretskiy A, Vassilev D.

Biol Direct. 2015 Aug 19;10:43. doi: 10.1186/s13062-015-0071-8.

7.

Polarization-Sensitive Optical Coherence Tomography and Conventional Retinal Imaging Strategies in Assessing Foveal Integrity in Geographic Atrophy.

Sayegh RG, Zotter S, Roberts PK, Kandula MM, Sacu S, Kreil DP, Baumann B, Pircher M, Hitzenberger CK, Schmidt-Erfurth U.

Invest Ophthalmol Vis Sci. 2015 Aug;56(9):5246-55. doi: 10.1167/iovs.14-15114.

PMID:
26244300
8.

Phylloxera (Daktulosphaira vitifoliae Fitch) alters the carbohydrate metabolism in root galls to allowing the compatible interaction with grapevine (Vitis ssp.) roots.

Griesser M, Lawo NC, Crespo-Martinez S, Schoedl-Hummel K, Wieczorek K, Gorecka M, Liebner F, Zweckmair T, Stralis Pavese N, Kreil D, Forneck A.

Plant Sci. 2015 May;234:38-49. doi: 10.1016/j.plantsci.2015.02.002. Epub 2015 Feb 16.

9.

Assessing technical performance in differential gene expression experiments with external spike-in RNA control ratio mixtures.

Munro SA, Lund SP, Pine PS, Binder H, Clevert DA, Conesa A, Dopazo J, Fasold M, Hochreiter S, Hong H, Jafari N, Kreil DP, Łabaj PP, Li S, Liao Y, Lin SM, Meehan J, Mason CE, Santoyo-Lopez J, Setterquist RA, Shi L, Shi W, Smyth GK, Stralis-Pavese N, Su Z, Tong W, Wang C, Wang J, Xu J, Ye Z, Yang Y, Yu Y, Salit M.

Nat Commun. 2014 Sep 25;5:5125. doi: 10.1038/ncomms6125.

PMID:
25254650
10.

The concordance between RNA-seq and microarray data depends on chemical treatment and transcript abundance.

Wang C, Gong B, Bushel PR, Thierry-Mieg J, Thierry-Mieg D, Xu J, Fang H, Hong H, Shen J, Su Z, Meehan J, Li X, Yang L, Li H, Łabaj PP, Kreil DP, Megherbi D, Gaj S, Caiment F, van Delft J, Kleinjans J, Scherer A, Devanarayan V, Wang J, Yang Y, Qian HR, Lancashire LJ, Bessarabova M, Nikolsky Y, Furlanello C, Chierici M, Albanese D, Jurman G, Riccadonna S, Filosi M, Visintainer R, Zhang KK, Li J, Hsieh JH, Svoboda DL, Fuscoe JC, Deng Y, Shi L, Paules RS, Auerbach SS, Tong W.

Nat Biotechnol. 2014 Sep;32(9):926-32. doi: 10.1038/nbt.3001. Epub 2014 Aug 24.

11.

Detecting and correcting systematic variation in large-scale RNA sequencing data.

Li S, Łabaj PP, Zumbo P, Sykacek P, Shi W, Shi L, Phan J, Wu PY, Wang M, Wang C, Thierry-Mieg D, Thierry-Mieg J, Kreil DP, Mason CE.

Nat Biotechnol. 2014 Sep;32(9):888-95. doi: 10.1038/nbt.3000. Epub 2014 Aug 24.

12.

The beet cyst nematode Heterodera schachtii modulates the expression of WRKY transcription factors in syncytia to favour its development in Arabidopsis roots.

Ali MA, Wieczorek K, Kreil DP, Bohlmann H.

PLoS One. 2014 Jul 17;9(7):e102360. doi: 10.1371/journal.pone.0102360. eCollection 2014.

13.

A longitudinal comparison of spectral-domain optical coherence tomography and fundus autofluorescence in geographic atrophy.

Simader C, Sayegh RG, Montuoro A, Azhary M, Koth AL, Baratsits M, Sacu S, Prünte C, Kreil DP, Schmidt-Erfurth U.

Am J Ophthalmol. 2014 Sep;158(3):557-66.e1. doi: 10.1016/j.ajo.2014.05.026. Epub 2014 May 28.

PMID:
24879944
14.

A systematic correlation of morphology and function using spectral domain optical coherence tomography and microperimetry in patients with geographic atrophy.

Sayegh RG, Kiss CG, Simader C, Kroisamer J, Montuoro A, Mittermüller TJ, Azhary M, Bolz M, Kreil DP, Schmidt-Erfurth U.

Br J Ophthalmol. 2014 Aug;98(8):1050-5. doi: 10.1136/bjophthalmol-2014-305195. Epub 2014 Apr 7.

PMID:
24711655
15.

WNT signaling suppression in the senescent human thymus.

Ferrando-Martínez S, Ruiz-Mateos E, Dudakov JA, Velardi E, Grillari J, Kreil DP, Muñoz-Fernandez MÁ, van den Brink MR, Leal M.

J Gerontol A Biol Sci Med Sci. 2015 Mar;70(3):273-81. doi: 10.1093/gerona/glu030. Epub 2014 Mar 22.

16.

Analysis of methanotroph community structure using a pmoA-based microarray.

Abell GC, Stralis-Pavese N, Pan Y, Bodrossy L.

Methods Mol Biol. 2014;1096:111-22. doi: 10.1007/978-1-62703-712-9_9.

PMID:
24515364
17.

A dual role for autophagy in a murine model of lung cancer.

Rao S, Tortola L, Perlot T, Wirnsberger G, Novatchkova M, Nitsch R, Sykacek P, Frank L, Schramek D, Komnenovic V, Sigl V, Aumayr K, Schmauss G, Fellner N, Handschuh S, Glösmann M, Pasierbek P, Schlederer M, Resch GP, Ma Y, Yang H, Popper H, Kenner L, Kroemer G, Penninger JM.

Nat Commun. 2014;5:3056. doi: 10.1038/ncomms4056.

PMID:
24445999
18.

Bacterial protein signals are associated with Crohn's disease.

Juste C, Kreil DP, Beauvallet C, Guillot A, Vaca S, Carapito C, Mondot S, Sykacek P, Sokol H, Blon F, Lepercq P, Levenez F, Valot B, Carré W, Loux V, Pons N, David O, Schaeffer B, Lepage P, Martin P, Monnet V, Seksik P, Beaugerie L, Ehrlich SD, Gibrat JF, Van Dorsselaer A, Doré J.

Gut. 2014 Oct;63(10):1566-77. doi: 10.1136/gutjnl-2012-303786. Epub 2014 Jan 16.

19.

Cross-platform ultradeep transcriptomic profiling of human reference RNA samples by RNA-Seq.

Xu J, Su Z, Hong H, Thierry-Mieg J, Thierry-Mieg D, Kreil DP, Mason CE, Tong W, Shi L.

Sci Data. 2014 Aug 26;1:140020. doi: 10.1038/sdata.2014.20. eCollection 2014.

20.

CHO microRNA engineering is growing up: recent successes and future challenges.

Jadhav V, Hackl M, Druz A, Shridhar S, Chung CY, Heffner KM, Kreil DP, Betenbaugh M, Shiloach J, Barron N, Grillari J, Borth N.

Biotechnol Adv. 2013 Dec;31(8):1501-13. doi: 10.1016/j.biotechadv.2013.07.007. Epub 2013 Aug 2. Review.

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