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Items: 1 to 20 of 63


Just how Lamarckian is CRISPR-Cas immunity: the continuum of evolvability mechanisms.

Koonin EV, Wolf YI.

Biol Direct. 2016 Feb 24;11(1):9. doi: 10.1186/s13062-016-0111-z.


Evolution of an archaeal virus nucleocapsid protein from the CRISPR-associated Cas4 nuclease.

Krupovic M, Cvirkaite-Krupovic V, Prangishvili D, Koonin EV.

Biol Direct. 2015 Oct 29;10:65. doi: 10.1186/s13062-015-0093-2.


Why the Central Dogma: on the nature of the great biological exclusion principle.

Koonin EV.

Biol Direct. 2015 Sep 16;10:52. doi: 10.1186/s13062-015-0084-3.


Evolution of the RAG1-RAG2 locus: both proteins came from the same transposon.

Kapitonov VV, Koonin EV.

Biol Direct. 2015 Apr 28;10:20. doi: 10.1186/s13062-015-0055-8.


A new family of hybrid virophages from an animal gut metagenome.

Yutin N, Kapitonov VV, Koonin EV.

Biol Direct. 2015 Apr 25;10:19. doi: 10.1186/s13062-015-0054-9.


Babela massiliensis, a representative of a widespread bacterial phylum with unusual adaptations to parasitism in amoebae.

Pagnier I, Yutin N, Croce O, Makarova KS, Wolf YI, Benamar S, Raoult D, Koonin EV, La Scola B.

Biol Direct. 2015 Mar 31;10:13. doi: 10.1186/s13062-015-0043-z.


Chordopoxvirus protein F12 implicated in enveloped virion morphogenesis is an inactivated DNA polymerase.

Yutin N, Faure G, Koonin EV, Mushegian AR.

Biol Direct. 2014 Nov 6;9(1):22. doi: 10.1186/1745-6150-9-22.


Impairment of translation in neurons as a putative causative factor for autism.

Poliakov E, Koonin EV, Rogozin IB.

Biol Direct. 2014 Jul 10;9:16. doi: 10.1186/1745-6150-9-16.


Pseudo-chaotic oscillations in CRISPR-virus coevolution predicted by bifurcation analysis.

Berezovskaya FS, Wolf YI, Koonin EV, Karev GP.

Biol Direct. 2014 Jul 2;9:13. doi: 10.1186/1745-6150-9-13.


Pandoraviruses are highly derived phycodnaviruses.

Yutin N, Koonin EV.

Biol Direct. 2013 Oct 23;8:25. doi: 10.1186/1745-6150-8-25.


Parabolic replicator dynamics and the principle of minimum Tsallis information gain.

Karev GP, Koonin EV.

Biol Direct. 2013 Aug 11;8:19. doi: 10.1186/1745-6150-8-19.


Comprehensive analysis of the HEPN superfamily: identification of novel roles in intra-genomic conflicts, defense, pathogenesis and RNA processing.

Anantharaman V, Makarova KS, Burroughs AM, Koonin EV, Aravind L.

Biol Direct. 2013 Jun 15;8:15. doi: 10.1186/1745-6150-8-15.


Biology Direct: celebrating 7 years of open, published peer review.

Koonin EV, Landweber LF, Lipman DJ.

Biol Direct. 2013 Apr 30;8:11. doi: 10.1186/1745-6150-8-11. No abstract available.


Insights into archaeal evolution and symbiosis from the genomes of a nanoarchaeon and its inferred crenarchaeal host from Obsidian Pool, Yellowstone National Park.

Podar M, Makarova KS, Graham DE, Wolf YI, Koonin EV, Reysenbach AL.

Biol Direct. 2013 Apr 22;8:9. doi: 10.1186/1745-6150-8-9.


Updated clusters of orthologous genes for Archaea: a complex ancestor of the Archaea and the byways of horizontal gene transfer.

Wolf YI, Makarova KS, Yutin N, Koonin EV.

Biol Direct. 2012 Dec 14;7:46. doi: 10.1186/1745-6150-7-46.


Live virus-free or die: coupling of antivirus immunity and programmed suicide or dormancy in prokaryotes.

Makarova KS, Anantharaman V, Aravind L, Koonin EV.

Biol Direct. 2012 Nov 14;7:40. doi: 10.1186/1745-6150-7-40.


Proteorhodopsin genes in giant viruses.

Yutin N, Koonin EV.

Biol Direct. 2012 Oct 4;7:34. doi: 10.1186/1745-6150-7-34.

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