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Items: 1 to 20 of 122

1.

Using proteins to study how microbes contribute to soil ecosystem services: The current state and future perspectives of soil metaproteomics.

Starke R, Jehmlich N, Bastida F.

J Proteomics. 2018 Nov 13. pii: S1874-3919(18)30401-9. doi: 10.1016/j.jprot.2018.11.011. [Epub ahead of print]

PMID:
30445181
2.

Expanding the use of spectral libraries in proteomics.

Deutsch EW, Perez-Riverol Y, Chalkley RJ, Wilhelm M, Tate S, Sachsenberg T, Walzer M, Käll L, Delanghe B, Böcker S, Schymanski EL, Wilmes P, Dorfer V, Kuster B, Volders PJ, Jehmlich N, Vissers JPC, Wolan DW, Wang AY, Mendoza L, Shofstahl J, Dowsey AW, Griss J, Salek RM, Neumann S, Binz PA, Lam H, Vizcaíno JA, Bandeira N, Röst H.

J Proteome Res. 2018 Oct 1. doi: 10.1021/acs.jproteome.8b00485. [Epub ahead of print]

PMID:
30270626
3.

Sulfur-34S and 36S Stable Isotope Labeling of Amino Acids for Quantification (SULAQ34/36) of Proteome Analyses.

Herbst FA, Jehmlich N, von Bergen M, Schmidt F.

Methods Mol Biol. 2018;1841:163-174. doi: 10.1007/978-1-4939-8695-8_12.

PMID:
30259486
4.

Delftia sp. LCW, a strain isolated from a constructed wetland shows novel properties for dimethylphenol isomers degradation.

Vásquez-Piñeros MA, Martínez-Lavanchy PM, Jehmlich N, Pieper DH, Rincón CA, Harms H, Junca H, Heipieper HJ.

BMC Microbiol. 2018 Sep 6;18(1):108. doi: 10.1186/s12866-018-1255-z.

5.

Land use driven change in soil pH affects microbial carbon cycling processes.

Malik AA, Puissant J, Buckeridge KM, Goodall T, Jehmlich N, Chowdhury S, Gweon HS, Peyton JM, Mason KE, van Agtmaal M, Blaud A, Clark IM, Whitaker J, Pywell RF, Ostle N, Gleixner G, Griffiths RI.

Nat Commun. 2018 Sep 4;9(1):3591. doi: 10.1038/s41467-018-05980-1.

6.

Desulfitobacterium contributes to the microbial transformation of 2,4,5-T by methanogenic enrichment cultures from a Vietnamese active landfill.

Lechner U, Türkowsky D, Dinh TTH, Al-Fathi H, Schwoch S, Franke S, Gerlach MS, Koch M, von Bergen M, Jehmlich N, Dang TCH.

Microb Biotechnol. 2018 Nov;11(6):1137-1156. doi: 10.1111/1751-7915.13301. Epub 2018 Aug 16.

7.

Thermal proteome profiling allows quantitative assessment of interactions between tetrachloroethene reductive dehalogenase and trichloroethene.

Türkowsky D, Lohmann P, Mühlenbrink M, Schubert T, Adrian L, Goris T, Jehmlich N, von Bergen M.

J Proteomics. 2019 Feb 10;192:10-17. doi: 10.1016/j.jprot.2018.05.018. Epub 2018 Jun 4.

PMID:
29879467
8.

Climate shapes the protein abundance of dominant soil bacteria.

Bastida F, Crowther TW, Prieto I, Routh D, García C, Jehmlich N.

Sci Total Environ. 2018 Nov 1;640-641:18-21. doi: 10.1016/j.scitotenv.2018.05.288. Epub 2018 May 28.

PMID:
29852443
9.

Gut microbial functional maturation and succession during human early life.

Cerdó T, Ruiz A, Acuña I, Jáuregui R, Jehmlich N, Haange SB, von Bergen M, Suárez A, Campoy C.

Environ Microbiol. 2018 Apr 24. doi: 10.1111/1462-2920.14235. [Epub ahead of print]

PMID:
29687552
10.

A Retentive Memory of Tetrachloroethene Respiration in Sulfurospirillum halorespirans - involved Proteins and a possible link to Acetylation of a Two-Component Regulatory System.

Türkowsky D, Esken J, Goris T, Schubert T, Diekert G, Jehmlich N, von Bergen M.

J Proteomics. 2018 Jun 15;181:36-46. doi: 10.1016/j.jprot.2018.03.030. Epub 2018 Apr 1.

PMID:
29617628
11.

Metabolic Adaptation of Methanogens in Anaerobic Digesters Upon Trace Element Limitation.

Wintsche B, Jehmlich N, Popp D, Harms H, Kleinsteuber S.

Front Microbiol. 2018 Mar 13;9:405. doi: 10.3389/fmicb.2018.00405. eCollection 2018.

12.

Active site alanine preceding catalytic cysteine determines unique substrate specificity in bacterial CoA-acylating prenal dehydrogenase.

Becher E, Heese A, Claußen L, Eisen S, Jehmlich N, Rohwerder T, Purswani J.

FEBS Lett. 2018 Apr;592(7):1150-1160. doi: 10.1002/1873-3468.13019. Epub 2018 Mar 10.

PMID:
29485713
13.

An integrative overview of genomic, transcriptomic and proteomic analyses in organohalide respiration research.

Türkowsky D, Jehmlich N, Diekert G, Adrian L, von Bergen M, Goris T.

FEMS Microbiol Ecol. 2018 Mar 1;94(3). doi: 10.1093/femsec/fiy013.

PMID:
29390082
14.

Tracking active groundwater microbes with D2 O labelling to understand their ecosystem function.

Taubert M, Stöckel S, Geesink P, Girnus S, Jehmlich N, von Bergen M, Rösch P, Popp J, Küsel K.

Environ Microbiol. 2018 Jan;20(1):369-384. doi: 10.1111/1462-2920.14010. Epub 2017 Dec 15.

PMID:
29194923
15.

The extracellular metaproteome of soils under semiarid climate: A methodological comparison of extraction buffers.

Bastida F, Jehmlich N, Torres IF, García C.

Sci Total Environ. 2018 Apr 1;619-620:707-711. doi: 10.1016/j.scitotenv.2017.11.134. Epub 2017 Nov 29.

PMID:
29156289
16.

Ammonia-oxidising archaea living at low pH: Insights from comparative genomics.

Herbold CW, Lehtovirta-Morley LE, Jung MY, Jehmlich N, Hausmann B, Han P, Loy A, Pester M, Sayavedra-Soto LA, Rhee SK, Prosser JI, Nicol GW, Wagner M, Gubry-Rangin C.

Environ Microbiol. 2017 Dec;19(12):4939-4952. doi: 10.1111/1462-2920.13971. Epub 2017 Dec 4.

17.

Identification of novel substrates of Shigella T3SA through analysis of its virulence plasmid-encoded secretome.

Pinaud L, Ferrari ML, Friedman R, Jehmlich N, von Bergen M, Phalipon A, Sansonetti PJ, Campbell-Valois FX.

PLoS One. 2017 Oct 26;12(10):e0186920. doi: 10.1371/journal.pone.0186920. eCollection 2017.

18.

A patchwork pathway for oxygenase-independent degradation of side chain containing steroids.

Warnke M, Jacoby C, Jung T, Agne M, Mergelsberg M, Starke R, Jehmlich N, von Bergen M, Richnow HH, Brüls T, Boll M.

Environ Microbiol. 2017 Nov;19(11):4684-4699. doi: 10.1111/1462-2920.13933. Epub 2017 Nov 2.

PMID:
28940833
19.

Insight into the modulation of intestinal proteome of juvenile common carp (Cyprinus carpio L.) after dietary exposure to ZnO nanoparticles.

Chupani L, Niksirat H, Lünsmann V, Haange SB, von Bergen M, Jehmlich N, Zuskova E.

Sci Total Environ. 2018 Feb 1;613-614:62-71. doi: 10.1016/j.scitotenv.2017.08.129. Epub 2017 Sep 26.

PMID:
28898813
20.

Ecological and functional adaptations to water management in a semiarid agroecosystem: a soil metaproteomics approach.

Starke R, Bastida F, Abadía J, García C, Nicolás E, Jehmlich N.

Sci Rep. 2017 Aug 31;7(1):10221. doi: 10.1038/s41598-017-09973-w.

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