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Items: 1 to 20 of 146

1.

The evolutionary traceability of a protein.

Jain A, Perisa D, Fliedner F, von Haeseler A, Ebersberger I.

Genome Biol Evol. 2019 Jan 15. doi: 10.1093/gbe/evz008. [Epub ahead of print]

PMID:
30649284
2.

Accurate detection of complex structural variations using single-molecule sequencing.

Sedlazeck FJ, Rescheneder P, Smolka M, Fang H, Nattestad M, von Haeseler A, Schatz MC.

Nat Methods. 2018 Jun;15(6):461-468. doi: 10.1038/s41592-018-0001-7. Epub 2018 Apr 30.

3.

In vivo insertion pool sequencing identifies virulence factors in a complex fungal-host interaction.

Uhse S, Pflug FG, Stirnberg A, Ehrlinger K, von Haeseler A, Djamei A.

PLoS Biol. 2018 Apr 23;16(4):e2005129. doi: 10.1371/journal.pbio.2005129. eCollection 2018 Apr.

4.

TRUmiCount: correctly counting absolute numbers of molecules using unique molecular identifiers.

Pflug FG, von Haeseler A.

Bioinformatics. 2018 Sep 15;34(18):3137-3144. doi: 10.1093/bioinformatics/bty283.

5.

Unifying the global phylogeny and environmental distribution of ammonia-oxidising archaea based on amoA genes.

Alves RJE, Minh BQ, Urich T, von Haeseler A, Schleper C.

Nat Commun. 2018 Apr 17;9(1):1517. doi: 10.1038/s41467-018-03861-1.

6.

SLAM-seq defines direct gene-regulatory functions of the BRD4-MYC axis.

Muhar M, Ebert A, Neumann T, Umkehrer C, Jude J, Wieshofer C, Rescheneder P, Lipp JJ, Herzog VA, Reichholf B, Cisneros DA, Hoffmann T, Schlapansky MF, Bhat P, von Haeseler A, Köcher T, Obenauf AC, Popow J, Ameres SL, Zuber J.

Science. 2018 May 18;360(6390):800-805. doi: 10.1126/science.aao2793. Epub 2018 Apr 5.

PMID:
29622725
7.

Germline Variants in the POT1-Gene in High-Risk Melanoma Patients in Austria.

Müller C, Krunic M, Wendt J, von Haeseler A, Okamoto I.

G3 (Bethesda). 2018 May 4;8(5):1475-1480. doi: 10.1534/g3.117.300394.

8.

MPBoot: fast phylogenetic maximum parsimony tree inference and bootstrap approximation.

Hoang DT, Vinh LS, Flouri T, Stamatakis A, von Haeseler A, Minh BQ.

BMC Evol Biol. 2018 Feb 2;18(1):11. doi: 10.1186/s12862-018-1131-3.

9.

Complex Models of Sequence Evolution Require Accurate Estimators as Exemplified with the Invariable Site Plus Gamma Model.

Nguyen LT, von Haeseler A, Minh BQ.

Syst Biol. 2018 May 1;67(3):552-558. doi: 10.1093/sysbio/syx092.

10.

UFBoot2: Improving the Ultrafast Bootstrap Approximation.

Hoang DT, Chernomor O, von Haeseler A, Minh BQ, Vinh LS.

Mol Biol Evol. 2018 Feb 1;35(2):518-522. doi: 10.1093/molbev/msx281.

11.

Thiol-linked alkylation of RNA to assess expression dynamics.

Herzog VA, Reichholf B, Neumann T, Rescheneder P, Bhat P, Burkard TR, Wlotzka W, von Haeseler A, Zuber J, Ameres SL.

Nat Methods. 2017 Dec;14(12):1198-1204. doi: 10.1038/nmeth.4435. Epub 2017 Sep 25.

12.

HIV-1 full-genome phylogenetics of generalized epidemics in sub-Saharan Africa: impact of missing nucleotide characters in next-generation sequences.

Ratmann O, Wymant C, Colijn C, Danaviah S, Essex M, Frost SDW, Gall A, Gaiseitsiwe S, Grabowski M, Gray R, Guindon S, von Haeseler A, Kaleebu P, Kendall M, Kozlov A, Manasa J, Minh BQ, Moyo S, Novitsky V, Nsubuga R, Pillay S, Quinn TC, Serwadda D, Ssemwanga D, Stamatakis A, Trifinopoulos J, Wawer M, Leigh Brown A, de Oliveira T, Kellam P, Pillay D, Fraser C.

AIDS Res Hum Retroviruses. 2017 May 25. doi: 10.1089/AID.2017.0061. [Epub ahead of print]

13.

ModelFinder: fast model selection for accurate phylogenetic estimates.

Kalyaanamoorthy S, Minh BQ, Wong TKF, von Haeseler A, Jermiin LS.

Nat Methods. 2017 Jun;14(6):587-589. doi: 10.1038/nmeth.4285. Epub 2017 May 8.

14.

The genomic basis of circadian and circalunar timing adaptations in a midge.

Kaiser TS, Poehn B, Szkiba D, Preussner M, Sedlazeck FJ, Zrim A, Neumann T, Nguyen LT, Betancourt AJ, Hummel T, Vogel H, Dorner S, Heyd F, von Haeseler A, Tessmar-Raible K.

Nature. 2016 Dec 1;540(7631):69-73. doi: 10.1038/nature20151. Epub 2016 Nov 21.

15.
16.

Reversible polymorphism-aware phylogenetic models and their application to tree inference.

Schrempf D, Minh BQ, De Maio N, von Haeseler A, Kosiol C.

J Theor Biol. 2016 Oct 21;407:362-370. doi: 10.1016/j.jtbi.2016.07.042. Epub 2016 Jul 29.

17.

Next-generation sequencing diagnostics of bacteremia in septic patients.

Grumaz S, Stevens P, Grumaz C, Decker SO, Weigand MA, Hofer S, Brenner T, von Haeseler A, Sohn K.

Genome Med. 2016 Jul 1;8(1):73. doi: 10.1186/s13073-016-0326-8.

18.

Terrace Aware Data Structure for Phylogenomic Inference from Supermatrices.

Chernomor O, von Haeseler A, Minh BQ.

Syst Biol. 2016 Nov;65(6):997-1008. Epub 2016 Apr 26.

19.

W-IQ-TREE: a fast online phylogenetic tool for maximum likelihood analysis.

Trifinopoulos J, Nguyen LT, von Haeseler A, Minh BQ.

Nucleic Acids Res. 2016 Jul 8;44(W1):W232-5. doi: 10.1093/nar/gkw256. Epub 2016 Apr 15.

20.

Separable Roles for a Caenorhabditis elegans RMI1 Homolog in Promoting and Antagonizing Meiotic Crossovers Ensure Faithful Chromosome Inheritance.

Jagut M, Hamminger P, Woglar A, Millonigg S, Paulin L, Mikl M, Dello Stritto MR, Tang L, Habacher C, Tam A, Gallach M, von Haeseler A, Villeneuve AM, Jantsch V.

PLoS Biol. 2016 Mar 24;14(3):e1002412. doi: 10.1371/journal.pbio.1002412. eCollection 2016 Mar.

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