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Items: 1 to 20 of 187

1.

Draft Genome Sequence of Talaromyces adpressus.

Cerullo G, Houbraken J, Granchi Z, Pepe O, Varriale S, Ventorino V, Chin-A-Woeng T, Meijer M, de Vries RP, Faraco V.

Genome Announc. 2018 Jan 11;6(2). pii: e01430-17. doi: 10.1128/genomeA.01430-17.

2.

The physiology of Agaricus bisporus in semi-commercial compost cultivation appears to be highly conserved among unrelated isolates.

Pontes MVA, Patyshakuliyeva A, Post H, Jurak E, Hildén K, Altelaar M, Heck A, Kabel MA, de Vries RP, Mäkelä MR.

Fungal Genet Biol. 2017 Dec 22. pii: S1087-1845(17)30186-X. doi: 10.1016/j.fgb.2017.12.004. [Epub ahead of print]

3.

ARA1 regulates not only l-arabinose but also d-galactose catabolism in Trichoderma reesei.

Benocci T, Aguilar-Pontes MV, Kun RS, Seiboth B, de Vries RP, Daly P.

FEBS Lett. 2018 Jan;592(1):60-70. doi: 10.1002/1873-3468.12932. Epub 2017 Dec 19.

PMID:
29215697
4.

Fungal feruloyl esterases: Functional validation of genome mining based enzyme discovery including uncharacterized subfamilies.

Dilokpimol A, Mäkelä MR, Varriale S, Zhou M, Cerullo G, Gidijala L, Hinkka H, Brás JLA, Jütten P, Piechot A, Verhaert R, Hildén KS, Faraco V, de Vries RP.

N Biotechnol. 2017 Nov 23;41:9-14. doi: 10.1016/j.nbt.2017.11.004. [Epub ahead of print]

PMID:
29174720
5.

Expression-based clustering of CAZyme-encoding genes of Aspergillus niger.

Gruben BS, Mäkelä MR, Kowalczyk JE, Zhou M, Benoit-Gelber I, De Vries RP.

BMC Genomics. 2017 Nov 23;18(1):900. doi: 10.1186/s12864-017-4164-x.

6.

In vivo functional analysis of L-rhamnose metabolic pathway in Aspergillus niger: a tool to identify the potential inducer of RhaR.

Khosravi C, Kun RS, Visser J, Aguilar-Pontes MV, de Vries RP, Battaglia E.

BMC Microbiol. 2017 Nov 6;17(1):214. doi: 10.1186/s12866-017-1118-z.

7.

Fungal glucuronoyl esterases: Genome mining based enzyme discovery and biochemical characterization.

Dilokpimol A, Mäkelä MR, Cerullo G, Zhou M, Varriale S, Gidijala L, Brás JLA, Jütten P, Piechot A, Verhaert R, Faraco V, Hilden KS, de Vries RP.

N Biotechnol. 2018 Jan 25;40(Pt B):282-287. doi: 10.1016/j.nbt.2017.10.003. Epub 2017 Oct 16.

PMID:
29051046
8.

High resolution visualization and exo-proteomics reveal the physiological role of XlnR and AraR in plant biomass colonization and degradation by Aspergillus niger.

Kowalczyk JE, Khosravi C, Purvine S, Dohnalkova A, Chrisler WB, Orr G, Robinson E, Zink E, Wiebenga A, Peng M, Battaglia E, Baker S, de Vries RP.

Environ Microbiol. 2017 Nov;19(11):4587-4598. doi: 10.1111/1462-2920.13923. Epub 2017 Oct 20.

PMID:
29027734
9.

Genetic transformation of the white-rot fungus Dichomitus squalens using a new commercial protoplasting cocktail.

Daly P, Slaghek GG, Casado López S, Wiebenga A, Hilden KS, de Vries RP, Mäkelä MR.

J Microbiol Methods. 2017 Dec;143:38-43. doi: 10.1016/j.mimet.2017.10.001. Epub 2017 Oct 4.

PMID:
28987554
10.

Current challenges of research on filamentous fungi in relation to human welfare and a sustainable bio-economy: a white paper.

Meyer V, Andersen MR, Brakhage AA, Braus GH, Caddick MX, Cairns TC, de Vries RP, Haarmann T, Hansen K, Hertz-Fowler C, Krappmann S, Mortensen UH, Peñalva MA, Ram AFJ, Head RM.

Fungal Biol Biotechnol. 2016 Aug 31;3:6. doi: 10.1186/s40694-016-0024-8. eCollection 2016.

11.

Combinatorial control of gene expression in Aspergillus niger grown on sugar beet pectin.

Kowalczyk JE, Lubbers RJM, Peng M, Battaglia E, Visser J, de Vries RP.

Sci Rep. 2017 Sep 27;7(1):12356. doi: 10.1038/s41598-017-12362-y.

12.

Functional diversity in Dichomitus squalens monokaryons.

Casado López S, Theelen B, Manserra S, Issak TY, Rytioja J, Mäkelä MR, de Vries RP.

IMA Fungus. 2017 Jun;8(1):17-25. doi: 10.5598/imafungus.2017.08.01.02. Epub 2017 Mar 8.

13.

Comparative analysis of basidiomycete transcriptomes reveals a core set of expressed genes encoding plant biomass degrading enzymes.

Peng M, Aguilar-Pontes MV, Hainaut M, Henrissat B, Hildén K, Mäkelä MR, de Vries RP.

Fungal Genet Biol. 2017 Aug 10. pii: S1087-1845(17)30129-9. doi: 10.1016/j.fgb.2017.08.001. [Epub ahead of print]

14.

Temporal transcriptome analysis of the white-rot fungus Obba rivulosa shows expression of a constitutive set of plant cell wall degradation targeted genes during growth on solid spruce wood.

Marinović M, Aguilar-Pontes MV, Zhou M, Miettinen O, de Vries RP, Mäkelä MR, Hildén K.

Fungal Genet Biol. 2017 Jul 25. pii: S1087-1845(17)30103-2. doi: 10.1016/j.fgb.2017.07.004. [Epub ahead of print]

PMID:
28754284
15.

N-acetylglucosamine, the building block of chitin, inhibits growth of Neurospora crassa.

Gaderer R, Seidl-Seiboth V, de Vries RP, Seiboth B, Kappel L.

Fungal Genet Biol. 2017 Oct;107:1-11. doi: 10.1016/j.fgb.2017.07.005. Epub 2017 Jul 20.

16.

A single mutation in Taiwanese H6N1 influenza hemagglutinin switches binding to human-type receptors.

de Vries RP, Tzarum N, Peng W, Thompson AJ, Ambepitiya Wickramasinghe IN, de la Pena ATT, van Breemen MJ, Bouwman KM, Zhu X, McBride R, Yu W, Sanders RW, Verheije MH, Wilson IA, Paulson JC.

EMBO Mol Med. 2017 Sep;9(9):1314-1325. doi: 10.15252/emmm.201707726.

17.

Three mutations switch H7N9 influenza to human-type receptor specificity.

de Vries RP, Peng W, Grant OC, Thompson AJ, Zhu X, Bouwman KM, de la Pena ATT, van Breemen MJ, Ambepitiya Wickramasinghe IN, de Haan CAM, Yu W, McBride R, Sanders RW, Woods RJ, Verheije MH, Wilson IA, Paulson JC.

PLoS Pathog. 2017 Jun 15;13(6):e1006390. doi: 10.1371/journal.ppat.1006390. eCollection 2017 Jun.

18.

Regulators of plant biomass degradation in ascomycetous fungi.

Benocci T, Aguilar-Pontes MV, Zhou M, Seiboth B, de Vries RP.

Biotechnol Biofuels. 2017 Jun 12;10:152. doi: 10.1186/s13068-017-0841-x. eCollection 2017. Review.

19.

Hydrolytic potential of five fungal supernatants to enhance a commercial enzyme cocktail.

Peciulyte A, Pisano M, de Vries RP, Olsson L.

Biotechnol Lett. 2017 Sep;39(9):1403-1411. doi: 10.1007/s10529-017-2371-9. Epub 2017 Jun 1.

20.

Microbial Interactions.

Gelber IB, de Vries RP, Tsang A.

Fungal Genet Biol. 2017 May;102:1-3. doi: 10.1016/j.fgb.2017.03.008. No abstract available.

PMID:
28554485

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