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Items: 1 to 20 of 93

1.

Genome evolution in the allotetraploid frog Xenopus laevis.

Session AM, Uno Y, Kwon T, Chapman JA, Toyoda A, Takahashi S, Fukui A, Hikosaka A, Suzuki A, Kondo M, van Heeringen SJ, Quigley I, Heinz S, Ogino H, Ochi H, Hellsten U, Lyons JB, Simakov O, Putnam N, Stites J, Kuroki Y, Tanaka T, Michiue T, Watanabe M, Bogdanovic O, Lister R, Georgiou G, Paranjpe SS, van Kruijsbergen I, Shu S, Carlson J, Kinoshita T, Ohta Y, Mawaribuchi S, Jenkins J, Grimwood J, Schmutz J, Mitros T, Mozaffari SV, Suzuki Y, Haramoto Y, Yamamoto TS, Takagi C, Heald R, Miller K, Haudenschild C, Kitzman J, Nakayama T, Izutsu Y, Robert J, Fortriede J, Burns K, Lotay V, Karimi K, Yasuoka Y, Dichmann DS, Flajnik MF, Houston DW, Shendure J, DuPasquier L, Vize PD, Zorn AM, Ito M, Marcotte EM, Wallingford JB, Ito Y, Asashima M, Ueno N, Matsuda Y, Veenstra GJ, Fujiyama A, Harland RM, Taira M, Rokhsar DS.

Nature. 2016 Oct 19;538(7625):336-343. doi: 10.1038/nature19840.

PMID:
27762356
2.

Structure of Gremlin-2 in Complex with GDF5 Gives Insight into DAN-Family-Mediated BMP Antagonism.

Nolan K, Kattamuri C, Rankin SA, Read RJ, Zorn AM, Thompson TB.

Cell Rep. 2016 Aug 23;16(8):2077-86. doi: 10.1016/j.celrep.2016.07.046.

3.

A Retinoic Acid-Hedgehog Cascade Coordinates Mesoderm-Inducing Signals and Endoderm Competence during Lung Specification.

Rankin SA, Han L, McCracken KW, Kenny AP, Anglin CT, Grigg EA, Crawford CM, Wells JM, Shannon JM, Zorn AM.

Cell Rep. 2016 Jun 28;16(1):66-78. doi: 10.1016/j.celrep.2016.05.060.

4.

Syndecan4 coordinates Wnt/JNK and BMP signaling to regulate foregut progenitor development.

Zhang Z, Rankin SA, Zorn AM.

Dev Biol. 2016 Aug 1;416(1):187-99. doi: 10.1016/j.ydbio.2016.05.025.

5.

Xenopus genomic data and browser resources.

Vize PD, Zorn AM.

Dev Biol. 2016 Mar 31. pii: S0012-1606(15)30357-2. doi: 10.1016/j.ydbio.2016.03.030. [Epub ahead of print] Review.

PMID:
27039265
6.

Modeling human development and disease in Xenopus. Preface.

LaBonne C, Zorn AM.

Dev Biol. 2015 Dec 15;408(2):179. doi: 10.1016/j.ydbio.2015.11.019. No abstract available.

PMID:
26674179
7.

Regeneration of Thyroid Function by Transplantation of Differentiated Pluripotent Stem Cells.

Kurmann AA, Serra M, Hawkins F, Rankin SA, Mori M, Astapova I, Ullas S, Lin S, Bilodeau M, Rossant J, Jean JC, Ikonomou L, Deterding RR, Shannon JM, Zorn AM, Hollenberg AN, Kotton DN.

Cell Stem Cell. 2015 Nov 5;17(5):527-42. doi: 10.1016/j.stem.2015.09.004.

8.

The Xenopus ORFeome: A resource that enables functional genomics.

Grant IM, Balcha D, Hao T, Shen Y, Trivedi P, Patrushev I, Fortriede JD, Karpinka JB, Liu L, Zorn AM, Stukenberg PT, Hill DE, Gilchrist MJ.

Dev Biol. 2015 Dec 15;408(2):345-57. doi: 10.1016/j.ydbio.2015.09.004.

9.

Identification of genes expressed in the migrating primitive myeloid lineage of Xenopus laevis.

Agricola ZN, Jagpal AK, Allbee AW, Prewitt AR, Shifley ET, Rankin SA, Zorn AM, Kenny AP.

Dev Dyn. 2016 Jan;245(1):47-55. doi: 10.1002/dvdy.24314.

PMID:
26264370
10.

Xenbase: Core features, data acquisition, and data processing.

James-Zorn C, Ponferrada VG, Burns KA, Fortriede JD, Lotay VS, Liu Y, Brad Karpinka J, Karimi K, Zorn AM, Vize PD.

Genesis. 2015 Aug;53(8):486-97. doi: 10.1002/dvg.22873.

11.

A New Nomenclature of Xenopus laevis Chromosomes Based on the Phylogenetic Relationship to Silurana/Xenopus tropicalis.

Matsuda Y, Uno Y, Kondo M, Gilchrist MJ, Zorn AM, Rokhsar DS, Schmid M, Taira M.

Cytogenet Genome Res. 2015;145(3-4):187-91. doi: 10.1159/000381292.

PMID:
25871511
12.

Finding our way through phenotypes.

Deans AR, Lewis SE, Huala E, Anzaldo SS, Ashburner M, Balhoff JP, Blackburn DC, Blake JA, Burleigh JG, Chanet B, Cooper LD, Courtot M, Csösz S, Cui H, Dahdul W, Das S, Dececchi TA, Dettai A, Diogo R, Druzinsky RE, Dumontier M, Franz NM, Friedrich F, Gkoutos GV, Haendel M, Harmon LJ, Hayamizu TF, He Y, Hines HM, Ibrahim N, Jackson LM, Jaiswal P, James-Zorn C, Köhler S, Lecointre G, Lapp H, Lawrence CJ, Le Novère N, Lundberg JG, Macklin J, Mast AR, Midford PE, Mikó I, Mungall CJ, Oellrich A, Osumi-Sutherland D, Parkinson H, Ramírez MJ, Richter S, Robinson PN, Ruttenberg A, Schulz KS, Segerdell E, Seltmann KC, Sharkey MJ, Smith AD, Smith B, Specht CD, Squires RB, Thacker RW, Thessen A, Fernandez-Triana J, Vihinen M, Vize PD, Vogt L, Wall CE, Walls RL, Westerfeld M, Wharton RA, Wirkner CS, Woolley JB, Yoder MJ, Zorn AM, Mabee P.

PLoS Biol. 2015 Jan 6;13(1):e1002033. doi: 10.1371/journal.pbio.1002033.

13.

Structure of neuroblastoma suppressor of tumorigenicity 1 (NBL1): insights for the functional variability across bone morphogenetic protein (BMP) antagonists.

Nolan K, Kattamuri C, Luedeke DM, Angerman EB, Rankin SA, Stevens ML, Zorn AM, Thompson TB.

J Biol Chem. 2015 Feb 20;290(8):4759-71. doi: 10.1074/jbc.M114.628412.

14.

Xenbase, the Xenopus model organism database; new virtualized system, data types and genomes.

Karpinka JB, Fortriede JD, Burns KA, James-Zorn C, Ponferrada VG, Lee J, Karimi K, Zorn AM, Vize PD.

Nucleic Acids Res. 2015 Jan;43(Database issue):D756-63. doi: 10.1093/nar/gku956.

15.

A Molecular atlas of Xenopus respiratory system development.

Rankin SA, Thi Tran H, Wlizla M, Mancini P, Shifley ET, Bloor SD, Han L, Vleminckx K, Wert SE, Zorn AM.

Dev Dyn. 2015 Jan;244(1):69-85. doi: 10.1002/dvdy.24180.

16.

Gene regulatory networks governing lung specification.

Rankin SA, Zorn AM.

J Cell Biochem. 2014 Aug;115(8):1343-50. doi: 10.1002/jcb.24810. Review.

17.

Par6b regulates the dynamics of apicobasal polarity during development of the stratified Xenopus epidermis.

Wang S, Cha SW, Zorn AM, Wylie C.

PLoS One. 2013 Oct 18;8(10):e76854. doi: 10.1371/journal.pone.0076854.

18.

Enhanced XAO: the ontology of Xenopus anatomy and development underpins more accurate annotation of gene expression and queries on Xenbase.

Segerdell E, Ponferrada VG, James-Zorn C, Burns KA, Fortriede JD, Dahdul WM, Vize PD, Zorn AM.

J Biomed Semantics. 2013 Oct 18;4(1):31. doi: 10.1186/2041-1480-4-31.

19.

Structure of protein related to Dan and Cerberus: insights into the mechanism of bone morphogenetic protein antagonism.

Nolan K, Kattamuri C, Luedeke DM, Deng X, Jagpal A, Zhang F, Linhardt RJ, Kenny AP, Zorn AM, Thompson TB.

Structure. 2013 Aug 6;21(8):1417-29. doi: 10.1016/j.str.2013.06.005.

20.

Different thresholds of Wnt-Frizzled 7 signaling coordinate proliferation, morphogenesis and fate of endoderm progenitor cells.

Zhang Z, Rankin SA, Zorn AM.

Dev Biol. 2013 Jun 1;378(1):1-12. doi: 10.1016/j.ydbio.2013.02.024.

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