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Items: 1 to 20 of 94

1.

Xenobiotic CAR activators induce Dlk1-Dio3 locus non-coding RNA expression in mouse liver.

Pouché L, Vitobello A, Römer M, Glogovac M, MacLeod AK, Ellinger-Ziegelbauer H, Westphal M, Dubost V, Stiehl DP, Dumotier B, Fekete A, Moulin P, Zell A, Schwarz M, Moreno R, Huang JTJ, Elcombe CR, Henderson CJ, Wolf CR, Moggs JG, Terranova R.

Toxicol Sci. 2017 May 25. doi: 10.1093/toxsci/kfx104. [Epub ahead of print]

PMID:
28541575
2.

ZBIT Bioinformatics Toolbox: A Web-Platform for Systems Biology and Expression Data Analysis.

Römer M, Eichner J, Dräger A, Wrzodek C, Wrzodek F, Zell A.

PLoS One. 2016 Feb 16;11(2):e0149263. doi: 10.1371/journal.pone.0149263. eCollection 2016.

3.

Tumor promotion and inhibition by phenobarbital in livers of conditional Apc-deficient mice.

Braeuning A, Gavrilov A, Geissler M, Wenz C, Colnot S, Templin MF, Metzger U, Römer M, Zell A, Schwarz M.

Arch Toxicol. 2016 Jun;90(6):1481-94. doi: 10.1007/s00204-016-1667-1. Epub 2016 Feb 2.

PMID:
26838046
4.

Coordinating Role of RXRα in Downregulating Hepatic Detoxification during Inflammation Revealed by Fuzzy-Logic Modeling.

Keller R, Klein M, Thomas M, Dräger A, Metzger U, Templin MF, Joos TO, Thasler WE, Zell A, Zanger UM.

PLoS Comput Biol. 2016 Jan 4;12(1):e1004431. doi: 10.1371/journal.pcbi.1004431. eCollection 2016 Jan.

5.

SBMLsqueezer 2: context-sensitive creation of kinetic equations in biochemical networks.

Dräger A, Zielinski DC, Keller R, Rall M, Eichner J, Palsson BO, Zell A.

BMC Syst Biol. 2015 Oct 9;9:68. doi: 10.1186/s12918-015-0212-9.

6.

Intestinal microbial communities associated with acute enteric infections and disease recovery.

Singh P, Teal TK, Marsh TL, Tiedje JM, Mosci R, Jernigan K, Zell A, Newton DW, Salimnia H, Lephart P, Sundin D, Khalife W, Britton RA, Rudrik JT, Manning SD.

Microbiome. 2015 Sep 22;3:45. doi: 10.1186/s40168-015-0109-2.

7.

Proinflammatory mesenchymal effects of the non-genotoxic hepatocarcinogen phenobarbital: a novel mechanism of antiapoptosis and tumor promotion.

Riegler T, Nejabat M, Eichner J, Stiebellehner M, Subosits S, Bilban M, Zell A, Huber WW, Schulte-Hermann R, Grasl-Kraupp B.

Carcinogenesis. 2015 Dec;36(12):1521-30. doi: 10.1093/carcin/bgv135. Epub 2015 Sep 16.

PMID:
26378027
8.

Influence of Feature Encoding and Choice of Classifier on Disease Risk Prediction in Genome-Wide Association Studies.

Mittag F, Römer M, Zell A.

PLoS One. 2015 Aug 18;10(8):e0135832. doi: 10.1371/journal.pone.0135832. eCollection 2015.

9.

A Novel Approach to Measuring Efficiency of Scientific Research Projects: Data Envelopment Analysis.

Dilts DM, Zell A, Orwoll E.

Clin Transl Sci. 2015 Oct;8(5):495-501. doi: 10.1111/cts.12303. Epub 2015 Aug 3.

10.

A ranking method for the concurrent learning of compounds with various activity profiles.

Dörr A, Rosenbaum L, Zell A.

J Cheminform. 2015 Jan 16;7(1):2. doi: 10.1186/s13321-014-0050-6. eCollection 2015.

11.

ToxDBScan: Large-scale similarity screening of toxicological databases for drug candidates.

Römer M, Backert L, Eichner J, Zell A.

Int J Mol Sci. 2014 Oct 21;15(10):19037-55. doi: 10.3390/ijms151019037.

12.

Dysregulated serum response factor triggers formation of hepatocellular carcinoma.

Ohrnberger S, Thavamani A, Braeuning A, Lipka DB, Kirilov M, Geffers R, Autenrieth SE, Römer M, Zell A, Bonin M, Schwarz M, Schütz G, Schirmacher P, Plass C, Longerich T, Nordheim A.

Hepatology. 2015 Mar;61(3):979-89. doi: 10.1002/hep.27539. Epub 2015 Jan 30. Erratum in: Hepatology. 2015 May;61(5):1772. Authenrieth, Stella E [corrected to Autenrieth, Stella E].

13.

Investigating recurrent neural networks for OCT A-scan based tissue analysis.

Otte C, Otte S, Wittig L, Hüttmann G, Kugler C, Drömann D, Zell A, Schlaefer A.

Methods Inf Med. 2014;53(4):245-9. doi: 10.3414/ME13-01-0135. Epub 2014 Jul 4.

PMID:
24992968
14.

RPPApipe: a pipeline for the analysis of reverse-phase protein array data.

Eichner J, Heubach Y, Ruff M, Kohlhof H, Strobl S, Mayer B, Pawlak M, Templin MF, Zell A.

Biosystems. 2014 Aug;122:19-24. doi: 10.1016/j.biosystems.2014.06.009. Epub 2014 Jun 18.

PMID:
24951946
15.

Cross-platform toxicogenomics for the prediction of non-genotoxic hepatocarcinogenesis in rat.

Römer M, Eichner J, Metzger U, Templin MF, Plummer S, Ellinger-Ziegelbauer H, Zell A.

PLoS One. 2014 May 15;9(5):e97640. doi: 10.1371/journal.pone.0097640. eCollection 2014.

16.

Evaluation of toxicogenomics approaches for assessing the risk of nongenotoxic carcinogenicity in rat liver.

Eichner J, Wrzodek C, Römer M, Ellinger-Ziegelbauer H, Zell A.

PLoS One. 2014 May 14;9(5):e97678. doi: 10.1371/journal.pone.0097678. eCollection 2014.

17.

Integrated enrichment analysis and pathway-centered visualization of metabolomics, proteomics, transcriptomics, and genomics data by using the InCroMAP software.

Eichner J, Rosenbaum L, Wrzodek C, Häring HU, Zell A, Lehmann R.

J Chromatogr B Analyt Technol Biomed Life Sci. 2014 Sep 1;966:77-82. doi: 10.1016/j.jchromb.2014.04.030. Epub 2014 Apr 25.

PMID:
24811976
18.

Ha-ras and β-catenin oncoproteins orchestrate metabolic programs in mouse liver tumors.

Unterberger EB, Eichner J, Wrzodek C, Lempiäinen H, Luisier R, Terranova R, Metzger U, Plummer S, Knorpp T, Braeuning A, Moggs J, Templin MF, Honndorf V, Piotto M, Zell A, Schwarz M.

Int J Cancer. 2014 Oct 1;135(7):1574-85. doi: 10.1002/ijc.28798. Epub 2014 Mar 3.

19.

Identification of short terminal motifs enriched by antibodies using peptide mass fingerprinting.

Planatscher H, Weiß F, Eisen D, van den Berg BH, Zell A, Joos T, Poetz O.

Bioinformatics. 2014 May 1;30(9):1205-13. doi: 10.1093/bioinformatics/btu009. Epub 2014 Jan 9.

PMID:
24413521
20.

TFpredict and SABINE: sequence-based prediction of structural and functional characteristics of transcription factors.

Eichner J, Topf F, Dräger A, Wrzodek C, Wanke D, Zell A.

PLoS One. 2013 Dec 12;8(12):e82238. doi: 10.1371/journal.pone.0082238. eCollection 2013.

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