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Items: 16

1.

Worldwide Protein Data Bank biocuration supporting open access to high-quality 3D structural biology data.

Young JY, Westbrook JD, Feng Z, Peisach E, Persikova I, Sala R, Sen S, Berrisford JM, Swaminathan GJ, Oldfield TJ, Gutmanas A, Igarashi R, Armstrong DR, Baskaran K, Chen L, Chen M, Clark AR, Di Costanzo L, Dimitropoulos D, Gao G, Ghosh S, Gore S, Guranovic V, Hendrickx PMS, Hudson BP, Ikegawa Y, Kengaku Y, Lawson CL, Liang Y, Mak L, Mukhopadhyay A, Narayanan B, Nishiyama K, Patwardhan A, Sahni G, Sanz-García E, Sato J, Sekharan MR, Shao C, Smart OS, Tan L, van Ginkel G, Yang H, Zhuravleva MA, Markley JL, Nakamura H, Kurisu G, Kleywegt GJ, Velankar S, Berman HM, Burley SK.

Database (Oxford). 2018 Jan 1;2018. doi: 10.1093/database/bay002.

2.

Validation of Structures in the Protein Data Bank.

Gore S, Sanz García E, Hendrickx PMS, Gutmanas A, Westbrook JD, Yang H, Feng Z, Baskaran K, Berrisford JM, Hudson BP, Ikegawa Y, Kobayashi N, Lawson CL, Mading S, Mak L, Mukhopadhyay A, Oldfield TJ, Patwardhan A, Peisach E, Sahni G, Sekharan MR, Sen S, Shao C, Smart OS, Ulrich EL, Yamashita R, Quesada M, Young JY, Nakamura H, Markley JL, Berman HM, Burley SK, Velankar S, Kleywegt GJ.

Structure. 2017 Dec 5;25(12):1916-1927. doi: 10.1016/j.str.2017.10.009. Epub 2017 Nov 22.

3.

Multivariate Analyses of Quality Metrics for Crystal Structures in the PDB Archive.

Shao C, Yang H, Westbrook JD, Young JY, Zardecki C, Burley SK.

Structure. 2017 Mar 7;25(3):458-468. doi: 10.1016/j.str.2017.01.013. Epub 2017 Feb 16.

4.

OneDep: Unified wwPDB System for Deposition, Biocuration, and Validation of Macromolecular Structures in the PDB Archive.

Young JY, Westbrook JD, Feng Z, Sala R, Peisach E, Oldfield TJ, Sen S, Gutmanas A, Armstrong DR, Berrisford JM, Chen L, Chen M, Di Costanzo L, Dimitropoulos D, Gao G, Ghosh S, Gore S, Guranovic V, Hendrickx PMS, Hudson BP, Igarashi R, Ikegawa Y, Kobayashi N, Lawson CL, Liang Y, Mading S, Mak L, Mir MS, Mukhopadhyay A, Patwardhan A, Persikova I, Rinaldi L, Sanz-Garcia E, Sekharan MR, Shao C, Swaminathan GJ, Tan L, Ulrich EL, van Ginkel G, Yamashita R, Yang H, Zhuravleva MA, Quesada M, Kleywegt GJ, Berman HM, Markley JL, Nakamura H, Velankar S, Burley SK.

Structure. 2017 Mar 7;25(3):536-545. doi: 10.1016/j.str.2017.01.004. Epub 2017 Feb 9.

5.

The three-dimensional (3D) printing of a flexible trachea.

Young JY, Chao IC, Coles-Black JC.

Anaesth Intensive Care. 2017 Jan;45(1):124. No abstract available.

6.

The RCSB protein data bank: integrative view of protein, gene and 3D structural information.

Rose PW, Prlić A, Altunkaya A, Bi C, Bradley AR, Christie CH, Costanzo LD, Duarte JM, Dutta S, Feng Z, Green RK, Goodsell DS, Hudson B, Kalro T, Lowe R, Peisach E, Randle C, Rose AS, Shao C, Tao YP, Valasatava Y, Voigt M, Westbrook JD, Woo J, Yang H, Young JY, Zardecki C, Berman HM, Burley SK.

Nucleic Acids Res. 2017 Jan 4;45(D1):D271-D281. doi: 10.1093/nar/gkw1000. Epub 2016 Oct 27.

7.

Comparison of non-sedated brain MRI and CT for the detection of acute traumatic injury in children 6 years of age or less.

Young JY, Duhaime AC, Caruso PA, Rincon SP.

Emerg Radiol. 2016 Aug;23(4):325-31. doi: 10.1007/s10140-016-1392-3. Epub 2016 May 11.

PMID:
27166965
8.

Acute ischemic stroke imaging: a practical approach for diagnosis and triage.

Young JY, Schaefer PW.

Int J Cardiovasc Imaging. 2016 Jan;32(1):19-33. doi: 10.1007/s10554-015-0757-0. Epub 2015 Sep 11. Review.

PMID:
26362874
9.

CT findings in a patient with bilateral metachronous carotidynia.

Young JY, Hijaz TA, Karagianis AG.

Clin Imaging. 2015 Mar-Apr;39(2):305-7. doi: 10.1016/j.clinimag.2014.12.001. Epub 2014 Dec 9.

PMID:
25575581
10.

Preoperative imaging of sensorineural hearing loss in pediatric candidates for cochlear implantation.

Young JY, Ryan ME, Young NM.

Radiographics. 2014 Sep-Oct;34(5):E133-49. doi: 10.1148/rg.345130083. Review.

PMID:
25208295
11.

Chemical annotation of small and peptide-like molecules at the Protein Data Bank.

Young JY, Feng Z, Dimitropoulos D, Sala R, Westbrook J, Zhuravleva M, Shao C, Quesada M, Peisach E, Berman HM.

Database (Oxford). 2013 Nov 29;2013:bat079. doi: 10.1093/database/bat079. Print 2013.

12.

Fibromuscular dysplasia and renal transplantation.

Young JY, Ryu RK, Casalino DD.

J Urol. 2011 Sep;186(3):1073-4. doi: 10.1016/j.juro.2011.06.013. Epub 2011 Jul 23. No abstract available.

PMID:
21784460
13.

A quantitative literature-curated gold standard for kinase-substrate pairs.

Sharifpoor S, Nguyen Ba AN, Youn JY, van Dyk D, Friesen H, Douglas AC, Kurat CF, Chong YT, Founk K, Moses AM, Andrews BJ.

Genome Biol. 2011;12(4):R39. doi: 10.1186/gb-2011-12-4-r39. Epub 2011 Apr 14. Erratum in: Genome Biol. 2012;13(5):417. Young, Ji-Young [corrected to Youn, Ji-Young].

14.

Radiation dose limits and liver toxicities resulting from multiple yttrium-90 radioembolization treatments for hepatocellular carcinoma.

Young JY, Rhee TK, Atassi B, Gates VL, Kulik L, Mulcahy MF, Larson AC, Ryu RK, Sato KT, Lewandowski RJ, Omary RA, Salem R.

J Vasc Interv Radiol. 2007 Nov;18(11):1375-82.

PMID:
18003987
15.

High incidence of postoperative bowel obstruction in newborns and infants.

Young JY, Kim DS, Muratore CS, Kurkchubasche AG, Tracy TF Jr, Luks FI.

J Pediatr Surg. 2007 Jun;42(6):962-5; discussion 965.

PMID:
17560203
16.

Effect of transcatheter arterial embolization on levels of hypoxia-inducible factor-1alpha in rabbit VX2 liver tumors.

Rhee TK, Young JY, Larson AC, Haines GK 3rd, Sato KT, Salem R, Mulcahy MF, Kulik LM, Paunesku T, Woloschak GE, Omary RA.

J Vasc Interv Radiol. 2007 May;18(5):639-45.

PMID:
17494846

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