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Items: 1 to 20 of 199


Influence of adaptive mutations, from thermal adaptation experiments, on the infection cycle of RNA bacteriophage Qβ.

Kashiwagi A, Kadoya T, Kumasaka N, Kumagai T, Tsushima FS, Yomo T.

Arch Virol. 2018 Jun 4. doi: 10.1007/s00705-018-3895-6. [Epub ahead of print]


De novo design and synthesis of a 30-cistron translation-factor module.

Shepherd TR, Du L, Liljeruhm J, Samudyata, Wang J, Sjödin MOD, Wetterhall M, Yomo T, Forster AC.

Nucleic Acids Res. 2017 Oct 13;45(18):10895-10905. doi: 10.1093/nar/gkx753.


A simple comparison of the extrinsic noise in gene expression between native and foreign regulations in Escherichia coli.

Ying BW, Seno S, Matsuda H, Yomo T.

Biochem Biophys Res Commun. 2017 May 6;486(3):852-857. doi: 10.1016/j.bbrc.2017.03.148. Epub 2017 Mar 28.


Combinatorial selection for replicable RNA by Qβ replicase while maintaining encoded gene function.

Yumura M, Yamamoto N, Yokoyama K, Mori H, Yomo T, Ichihashi N.

PLoS One. 2017 Mar 22;12(3):e0174130. doi: 10.1371/journal.pone.0174130. eCollection 2017.


Density-Dependent Recycling Promotes the Long-Term Survival of Bacterial Populations during Periods of Starvation.

Takano S, Pawlowska BJ, Gudelj I, Yomo T, Tsuru S.

MBio. 2017 Feb 7;8(1). pii: e02336-16. doi: 10.1128/mBio.02336-16.


Reaction dynamics analysis of a reconstituted Escherichia coli protein translation system by computational modeling.

Matsuura T, Tanimura N, Hosoda K, Yomo T, Shimizu Y.

Proc Natl Acad Sci U S A. 2017 Feb 21;114(8):E1336-E1344. doi: 10.1073/pnas.1615351114. Epub 2017 Feb 6.


Constructive Approaches for Understanding the Origin of Self-Replication and Evolution.

Ichihashi N, Yomo T.

Life (Basel). 2016 Jul 13;6(3). pii: E26. doi: 10.3390/life6030026. Review.


Inference of fitness values and putative appearance time points for evolvable self-replicating molecules from time series of occurrence frequencies in an evolution reactor.

Aita T, Ichihashi N, Yomo T.

J Theor Biol. 2016 Jul 21;401:38-42. doi: 10.1016/j.jtbi.2016.04.014. Epub 2016 Apr 16.


Adaptation and Diversification of an RNA Replication System under Initiation- or Termination-Impaired Translational Conditions.

Mizuuchi R, Ichihashi N, Yomo T.

Chembiochem. 2016 Jul 1;17(13):1229-32. doi: 10.1002/cbic.201600100. Epub 2016 Apr 28.


Effect of Liposome Size on Internal RNA Replication Coupled with Replicase Translation.

Sunami T, Ichihashi N, Nishikawa T, Kazuta Y, Yomo T.

Chembiochem. 2016 Jul 1;17(13):1282-9. doi: 10.1002/cbic.201500662. Epub 2016 May 17.


Host-parasite oscillation dynamics and evolution in a compartmentalized RNA replication system.

Bansho Y, Furubayashi T, Ichihashi N, Yomo T.

Proc Natl Acad Sci U S A. 2016 Apr 12;113(15):4045-50. doi: 10.1073/pnas.1524404113. Epub 2016 Mar 28.


The Escherichia coli transcriptome linked to growth fitness.

Ying BW, Yama K, Kitahara K, Yomo T.

Genom Data. 2015 Nov 10;7:1-3. doi: 10.1016/j.gdata.2015.11.011. eCollection 2016 Mar.


Packet Fragmentation and Reassembly in Molecular Communication.

Furubayashi T, Nakano T, Eckford A, Okaie Y, Yomo T.

IEEE Trans Nanobioscience. 2016 Apr;15(3):284-8. doi: 10.1109/TNB.2016.2526051. Epub 2016 Feb 12.


Sustainable proliferation of liposomes compatible with inner RNA replication.

Tsuji G, Fujii S, Sunami T, Yomo T.

Proc Natl Acad Sci U S A. 2016 Jan 19;113(3):590-5. doi: 10.1073/pnas.1516893113. Epub 2015 Dec 28.


Bacterial transcriptome reorganization in thermal adaptive evolution.

Ying BW, Matsumoto Y, Kitahara K, Suzuki S, Ono N, Furusawa C, Kishimoto T, Yomo T.

BMC Genomics. 2015 Oct 16;16:802. doi: 10.1186/s12864-015-1999-x.


Replication of partial double-stranded RNAs by Qβ replicase.

Tomita K, Ichihashi N, Yomo T.

Biochem Biophys Res Commun. 2015 Nov 13;467(2):293-6. doi: 10.1016/j.bbrc.2015.09.169. Epub 2015 Oct 12.


Genomic confirmation of nutrient-dependent mutability of mutators in Escherichia coli.

Tsuru S, Ishizawa Y, Shibai A, Takahashi Y, Motooka D, Nakamura S, Yomo T.

Genes Cells. 2015 Dec;20(12):972-81. doi: 10.1111/gtc.12300. Epub 2015 Sep 28.


Functional specialization in regulation and quality control in thermal adaptive evolution.

Yama K, Matsumoto Y, Murakami Y, Seno S, Matsuda H, Gotoh K, Motooka D, Nakamura S, Ying BW, Yomo T.

Genes Cells. 2015 Nov;20(11):943-55. doi: 10.1111/gtc.12298. Epub 2015 Sep 15.


Periodic Pattern of Genetic and Fitness Diversity during Evolution of an Artificial Cell-Like System.

Ichihashi N, Aita T, Motooka D, Nakamura S, Yomo T.

Mol Biol Evol. 2015 Dec;32(12):3205-14. doi: 10.1093/molbev/msv189. Epub 2015 Sep 4.


Phenotypic convergence in bacterial adaptive evolution to ethanol stress.

Horinouchi T, Suzuki S, Hirasawa T, Ono N, Yomo T, Shimizu H, Furusawa C.

BMC Evol Biol. 2015 Sep 3;15:180. doi: 10.1186/s12862-015-0454-6.

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