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Items: 1 to 20 of 98

1.

A Clb/Cdk1-mediated regulation of Fkh2 synchronizes CLB expression in the budding yeast cell cycle.

Linke C, Chasapi A, González-Novo A, Al Sawad I, Tognetti S, Klipp E, Loog M, Krobitsch S, Posas F, Xenarios I, Barberis M.

NPJ Syst Biol Appl. 2017 Mar 6;3:7. doi: 10.1038/s41540-017-0008-1. eCollection 2017.

2.

Bacterial Virus Ontology; Coordinating across Databases.

Hulo C, Masson P, Toussaint A, Osumi-Sutherland D, de Castro E, Auchincloss AH, Poux S, Bougueleret L, Xenarios I, Le Mercier P.

Viruses. 2017 May 23;9(6). pii: E126. doi: 10.3390/v9060126.

3.

TIE-2 expressing monocytes in human cancers.

Turrini R, Pabois A, Xenarios I, Coukos G, Delaloye JF, Doucey MA.

Oncoimmunology. 2017 Mar 16;6(4):e1303585. doi: 10.1080/2162402X.2017.1303585. eCollection 2017.

4.

Molecular phenotyping of multiple mouse strains under metabolic challenge uncovers a role for Elovl2 in glucose-induced insulin secretion.

Cruciani-Guglielmacci C, Bellini L, Denom J, Oshima M, Fernandez N, Normandie-Levi P, Berney XP, Kassis N, Rouch C, Dairou J, Gorman T, Smith DM, Marley A, Liechti R, Kuznetsov D, Wigger L, Burdet F, Lefèvre AL, Wehrle I, Uphues I, Hildebrandt T, Rust W, Bernard C, Ktorza A, Rutter GA, Scharfmann R, Xenarios I, Le Stunff H, Thorens B, Magnan C, Ibberson M.

Mol Metab. 2017 Jan 26;6(4):340-351. doi: 10.1016/j.molmet.2017.01.009. eCollection 2017 Apr.

5.

The ins and outs of eukaryotic viruses: Knowledge base and ontology of a viral infection.

Hulo C, Masson P, de Castro E, Auchincloss AH, Foulger R, Poux S, Lomax J, Bougueleret L, Xenarios I, Le Mercier P.

PLoS One. 2017 Feb 16;12(2):e0171746. doi: 10.1371/journal.pone.0171746. eCollection 2017.

6.

Pressing needs of biomedical text mining in biocuration and beyond: opportunities and challenges.

Singhal A, Leaman R, Catlett N, Lemberger T, McEntyre J, Polson S, Xenarios I, Arighi C, Lu Z.

Database (Oxford). 2016 Dec 26;2016. pii: baw161. doi: 10.1093/database/baw161. Print 2016.

7.

Updates in Rhea - an expert curated resource of biochemical reactions.

Morgat A, Lombardot T, Axelsen KB, Aimo L, Niknejad A, Hyka-Nouspikel N, Coudert E, Pozzato M, Pagni M, Moretti S, Rosanoff S, Onwubiko J, Bougueleret L, Xenarios I, Redaschi N, Bridge A.

Nucleic Acids Res. 2017 Apr 20;45(7):4279. doi: 10.1093/nar/gkw1299. No abstract available.

8.

Neighbor Detection Induces Organ-Specific Transcriptomes, Revealing Patterns Underlying Hypocotyl-Specific Growth.

Kohnen MV, Schmid-Siegert E, Trevisan M, Petrolati LA, Sénéchal F, Müller-Moulé P, Maloof J, Xenarios I, Fankhauser C.

Plant Cell. 2016 Dec;28(12):2889-2904. doi: 10.1105/tpc.16.00463. Epub 2016 Dec 6.

9.

InterPro in 2017-beyond protein family and domain annotations.

Finn RD, Attwood TK, Babbitt PC, Bateman A, Bork P, Bridge AJ, Chang HY, Dosztányi Z, El-Gebali S, Fraser M, Gough J, Haft D, Holliday GL, Huang H, Huang X, Letunic I, Lopez R, Lu S, Marchler-Bauer A, Mi H, Mistry J, Natale DA, Necci M, Nuka G, Orengo CA, Park Y, Pesseat S, Piovesan D, Potter SC, Rawlings ND, Redaschi N, Richardson L, Rivoire C, Sangrador-Vegas A, Sigrist C, Sillitoe I, Smithers B, Squizzato S, Sutton G, Thanki N, Thomas PD, Tosatto SC, Wu CH, Xenarios I, Yeh LS, Young SY, Mitchell AL.

Nucleic Acids Res. 2017 Jan 4;45(D1):D190-D199. doi: 10.1093/nar/gkw1107. Epub 2016 Nov 29.

10.

Global mapping of highly pathogenic avian influenza H5N1 and H5Nx clade 2.3.4.4 viruses with spatial cross-validation.

Dhingra MS, Artois J, Robinson TP, Linard C, Chaiban C, Xenarios I, Engler R, Liechti R, Kuznetsov D, Xiao X, Dobschuetz SV, Claes F, Newman SH, Dauphin G, Gilbert M.

Elife. 2016 Nov 25;5. pii: e19571. doi: 10.7554/eLife.19571.

11.

Identification of a RAI1-associated disease network through integration of exome sequencing, transcriptomics, and 3D genomics.

Loviglio MN, Beck CR, White JJ, Leleu M, Harel T, Guex N, Niknejad A, Bi W, Chen ES, Crespo I, Yan J, Charng WL, Gu S, Fang P, Coban-Akdemir Z, Shaw CA, Jhangiani SN, Muzny DM, Gibbs RA, Rougemont J, Xenarios I, Lupski JR, Reymond A.

Genome Med. 2016 Nov 1;8(1):105.

12.

Updates in Rhea - an expert curated resource of biochemical reactions.

Morgat A, Lombardot T, Axelsen KB, Aimo L, Niknejad A, Hyka-Nouspikel N, Coudert E, Pozzato M, Pagni M, Moretti S, Rosanoff S, Onwubiko J, Bougueleret L, Xenarios I, Redaschi N, Bridge A.

Nucleic Acids Res. 2017 Jan 4;45(D1):D415-D418. doi: 10.1093/nar/gkw990. Epub 2016 Oct 26. Erratum in: Nucleic Acids Res. 2016 Dec 15;:.

13.

MAR-Mediated transgene integration into permissive chromatin and increased expression by recombination pathway engineering.

Kostyrko K, Neuenschwander S, Junier T, Regamey A, Iseli C, Schmid-Siegert E, Bosshard S, Majocchi S, Le Fourn V, Girod PA, Xenarios I, Mermod N.

Biotechnol Bioeng. 2017 Feb;114(2):384-396. doi: 10.1002/bit.26086. Epub 2016 Oct 3.

14.

Boolean regulatory network reconstruction using literature based knowledge with a genetic algorithm optimization method.

Dorier J, Crespo I, Niknejad A, Liechti R, Ebeling M, Xenarios I.

BMC Bioinformatics. 2016 Oct 6;17(1):410.

15.

Clade-level Spatial Modelling of HPAI H5N1 Dynamics in the Mekong Region Reveals New Patterns and Associations with Agro-Ecological Factors.

Artois J, Newman SH, Dhingra MS, Chaiban C, Linard C, Cattoli G, Monne I, Fusaro A, Xenarios I, Engler R, Liechti R, Kuznetsov D, Pham TL, Nguyen T, Pham VD, Castellan D, Von Dobschuetz S, Claes F, Dauphin G, Inui K, Gilbert M.

Sci Rep. 2016 Jul 25;6:30316. doi: 10.1038/srep30316.

16.

Cell-free DNA testing of an extended range of chromosomal anomalies: clinical experience with 6,388 consecutive cases.

Pescia G, Guex N, Iseli C, Brennan L, Osteras M, Xenarios I, Farinelli L, Conrad B.

Genet Med. 2017 Feb;19(2):169-175. doi: 10.1038/gim.2016.72. Epub 2016 Jun 30.

17.

Identification of a novel PPARβ/δ/miR-21-3p axis in UV-induced skin inflammation.

Degueurce G, D'Errico I, Pich C, Ibberson M, Schütz F, Montagner A, Sgandurra M, Mury L, Jafari P, Boda A, Meunier J, Rezzonico R, Brembilla NC, Hohl D, Kolios A, Hofbauer G, Xenarios I, Michalik L.

EMBO Mol Med. 2016 Aug 1;8(8):919-36. doi: 10.15252/emmm.201505384. Print 2016 Aug.

18.

Analysis of the dynamic co-expression network of heart regeneration in the zebrafish.

Rodius S, Androsova G, Götz L, Liechti R, Crespo I, Merz S, Nazarov PV, de Klein N, Jeanty C, González-Rosa JM, Muller A, Bernardin F, Niclou SP, Vallar L, Mercader N, Ibberson M, Xenarios I, Azuaje F.

Sci Rep. 2016 May 31;6:26822. doi: 10.1038/srep26822.

19.

Improving HIV proteome annotation: new features of BioAfrica HIV Proteomics Resource.

Druce M, Hulo C, Masson P, Sommer P, Xenarios I, Le Mercier P, De Oliveira T.

Database (Oxford). 2016 Apr 17;2016. pii: baw045. doi: 10.1093/database/baw045. Print 2016.

20.

TIE-2-expressing monocytes are lymphangiogenic and associate specifically with lymphatics of human breast cancer.

Bron S, Henry L, Faes-Van't Hull E, Turrini R, Vanhecke D, Guex N, Ifticene-Treboux A, Marina Iancu E, Semilietof A, Rufer N, Lehr HA, Xenarios I, Coukos G, Delaloye JF, Doucey MA.

Oncoimmunology. 2015 Aug 20;5(2):e1073882. eCollection 2016 Feb.

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