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Items: 12

1.

Validation of picogram- and femtogram-input DNA libraries for microscale metagenomics.

Rinke C, Low S, Woodcroft BJ, Raina JB, Skarshewski A, Le XH, Butler MK, Stocker R, Seymour J, Tyson GW, Hugenholtz P.

PeerJ. 2016 Sep 22;4:e2486. doi: 10.7717/peerj.2486.

2.

The Widespread Prevalence and Functional Significance of Silk-Like Structural Proteins in Metazoan Biological Materials.

McDougall C, Woodcroft BJ, Degnan BM.

PLoS One. 2016 Jul 14;11(7):e0159128. doi: 10.1371/journal.pone.0159128.

3.

OrfM: a fast open reading frame predictor for metagenomic data.

Woodcroft BJ, Boyd JA, Tyson GW.

Bioinformatics. 2016 Sep 1;32(17):2702-3. doi: 10.1093/bioinformatics/btw241.

4.

Archaeal and bacterial communities across a chronosequence of drained lake basins in Arctic Alaska.

Kao-Kniffin J, Woodcroft BJ, Carver SM, Bockheim JG, Handelsman J, Tyson GW, Hinkel KM, Mueller CW.

Sci Rep. 2015 Dec 18;5:18165. doi: 10.1038/srep18165.

5.

Back from the dead; the curious tale of the predatory cyanobacterium Vampirovibrio chlorellavorus.

Soo RM, Woodcroft BJ, Parks DH, Tyson GW, Hugenholtz P.

PeerJ. 2015 May 21;3:e968. doi: 10.7717/peerj.968.

6.

GroopM: an automated tool for the recovery of population genomes from related metagenomes.

Imelfort M, Parks D, Woodcroft BJ, Dennis P, Hugenholtz P, Tyson GW.

PeerJ. 2014 Sep 30;2:e603. doi: 10.7717/peerj.603.

7.

Organellar proteomics reveals hundreds of novel nuclear proteins in the malaria parasite Plasmodium falciparum.

Oehring SC, Woodcroft BJ, Moes S, Wetzel J, Dietz O, Pulfer A, Dekiwadia C, Maeser P, Flueck C, Witmer K, Brancucci NM, Niederwieser I, Jenoe P, Ralph SA, Voss TS.

Genome Biol. 2012 Nov 26;13(11):R108. doi: 10.1186/gb-2012-13-11-r108.

8.

Marked changes in neuropeptide expression accompany broadcast spawnings in the gastropod Haliotis asinina.

York PS, Cummins SF, Degnan SM, Woodcroft BJ, Degnan BM.

Front Zool. 2012 May 9;9(1):9. doi: 10.1186/1742-9994-9-9.

9.

Biogem: an effective tool-based approach for scaling up open source software development in bioinformatics.

Bonnal RJ, Aerts J, Githinji G, Goto N, MacLean D, Miller CA, Mishima H, Pagani M, Ramirez-Gonzalez R, Smant G, Strozzi F, Syme R, Vos R, Wennblom TJ, Woodcroft BJ, Katayama T, Prins P.

Bioinformatics. 2012 Apr 1;28(7):1035-7. doi: 10.1093/bioinformatics/bts080.

10.

The Amphimedon queenslandica genome and the evolution of animal complexity.

Srivastava M, Simakov O, Chapman J, Fahey B, Gauthier ME, Mitros T, Richards GS, Conaco C, Dacre M, Hellsten U, Larroux C, Putnam NH, Stanke M, Adamska M, Darling A, Degnan SM, Oakley TH, Plachetzki DC, Zhai Y, Adamski M, Calcino A, Cummins SF, Goodstein DM, Harris C, Jackson DJ, Leys SP, Shu S, Woodcroft BJ, Vervoort M, Kosik KS, Manning G, Degnan BM, Rokhsar DS.

Nature. 2010 Aug 5;466(7307):720-6. doi: 10.1038/nature09201.

11.

Drug target prediction and prioritization: using orthology to predict essentiality in parasite genomes.

Doyle MA, Gasser RB, Woodcroft BJ, Hall RS, Ralph SA.

BMC Genomics. 2010 Apr 3;11:222. doi: 10.1186/1471-2164-11-222.

12.

Early origins and evolution of microRNAs and Piwi-interacting RNAs in animals.

Grimson A, Srivastava M, Fahey B, Woodcroft BJ, Chiang HR, King N, Degnan BM, Rokhsar DS, Bartel DP.

Nature. 2008 Oct 30;455(7217):1193-7. doi: 10.1038/nature07415.

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