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DeepLoc: prediction of protein subcellular localization using deep learning.

Almagro Armenteros JJ, Sønderby CK, Sønderby SK, Nielsen H, Winther O.

Bioinformatics. 2017 Nov 1;33(21):3387-3395. doi: 10.1093/bioinformatics/btx431. Erratum in: Bioinformatics. 2017 Sep 19;:.


DeepLoc: prediction of protein subcellular localization using deep learning.

Almagro Armenteros JJ, Sønderby CK, Sønderby SK, Nielsen H, Winther O.

Bioinformatics. 2017 Dec 15;33(24):4049. doi: 10.1093/bioinformatics/btx548. No abstract available.


An introduction to deep learning on biological sequence data: examples and solutions.

Jurtz VI, Johansen AR, Nielsen M, Almagro Armenteros JJ, Nielsen H, Sønderby CK, Winther O, Sønderby SK.

Bioinformatics. 2017 Nov 15;33(22):3685-3690. doi: 10.1093/bioinformatics/btx531.


The Bipolar Illness Onset study: research protocol for the BIO cohort study.

Kessing LV, Munkholm K, Faurholt-Jepsen M, Miskowiak KW, Nielsen LB, Frikke-Schmidt R, Ekstrøm C, Winther O, Pedersen BK, Poulsen HE, McIntyre RS, Kapczinski F, Gattaz WF, Bardram J, Frost M, Mayora O, Knudsen GM, Phillips M, Vinberg M.

BMJ Open. 2017 Jun 23;7(6):e015462. doi: 10.1136/bmjopen-2016-015462.


Reducing the rate and duration of Re-ADMISsions among patients with unipolar disorder and bipolar disorder using smartphone-based monitoring and treatment - the RADMIS trials: study protocol for two randomized controlled trials.

Faurholt-Jepsen M, Frost M, Martiny K, Tuxen N, Rosenberg N, Busk J, Winther O, Bardram JE, Kessing LV.

Trials. 2017 Jun 15;18(1):277. doi: 10.1186/s13063-017-2015-3.


Gaussian process based independent analysis for temporal source separation in fMRI.

Hald DH, Henao R, Winther O.

Neuroimage. 2017 May 15;152:563-574. doi: 10.1016/j.neuroimage.2017.02.070. Epub 2017 Feb 27.


Voice analysis as an objective state marker in bipolar disorder.

Faurholt-Jepsen M, Busk J, Frost M, Vinberg M, Christensen EM, Winther O, Bardram JE, Kessing LV.

Transl Psychiatry. 2016 Jul 19;6:e856. doi: 10.1038/tp.2016.123.


Angiotensinogen and HLA class II predict bevacizumab response in recurrent glioblastoma patients.

Urup T, Michaelsen SR, Olsen LR, Toft A, Christensen IJ, Grunnet K, Winther O, Broholm H, Kosteljanetz M, Issazadeh-Navikas S, Poulsen HS, Lassen U.

Mol Oncol. 2016 Oct;10(8):1160-8. doi: 10.1016/j.molonc.2016.05.005. Epub 2016 May 26.


Competence Classification of Cumulus and Granulosa Cell Transcriptome in Embryos Matched by Morphology and Female Age.

Borup R, Thuesen LL, Andersen CY, Nyboe-Andersen A, Ziebe S, Winther O, Grøndahl ML.

PLoS One. 2016 Apr 29;11(4):e0153562. doi: 10.1371/journal.pone.0153562. eCollection 2016.


A computational method for identification of vaccine targets from protein regions of conserved human leukocyte antigen binding.

Olsen LR, Simon C, Kudahl UJ, Bagger FO, Winther O, Reinherz EL, Zhang GL, Brusic V.

BMC Med Genomics. 2015;8 Suppl 4:S1. doi: 10.1186/1755-8794-8-S4-S1. Epub 2015 Dec 9.


BloodSpot: a database of gene expression profiles and transcriptional programs for healthy and malignant haematopoiesis.

Bagger FO, Sasivarevic D, Sohi SH, Laursen LG, Pundhir S, Sønderby CK, Winther O, Rapin N, Porse BT.

Nucleic Acids Res. 2016 Jan 4;44(D1):D917-24. doi: 10.1093/nar/gkv1101. Epub 2015 Oct 26.


Tumor suppressor ASXL1 is essential for the activation of INK4B expression in response to oncogene activity and anti-proliferative signals.

Wu X, Bekker-Jensen IH, Christensen J, Rasmussen KD, Sidoli S, Qi Y, Kong Y, Wang X, Cui Y, Xiao Z, Xu G, Williams K, Rappsilber J, Sønderby CK, Winther O, Jensen ON, Helin K.

Cell Res. 2015 Nov;25(11):1205-18. doi: 10.1038/cr.2015.121. Epub 2015 Oct 16.


Rare disease diagnosis: A review of web search, social media and large-scale data-mining approaches.

Svenstrup D, Jørgensen HL, Winther O.

Rare Dis. 2015 Sep 16;3(1):e1083145. doi: 10.1080/21675511.2015.1083145. eCollection 2015. Review.


Airway Inflammation in Chronic Rhinosinusitis with Nasal Polyps and Asthma: The United Airways Concept Further Supported.

Håkansson K, Bachert C, Konge L, Thomsen SF, Pedersen AE, Poulsen SS, Martin-Bertelsen T, Winther O, Backer V, von Buchwald C.

PLoS One. 2015 Jul 1;10(7):e0127228. doi: 10.1371/journal.pone.0127228. eCollection 2015.


Cancers of unknown primary origin (CUP) are characterized by chromosomal instability (CIN) compared to metastasis of know origin.

Vikeså J, Møller AK, Kaczkowski B, Borup R, Winther O, Henao R, Krogh A, Perell K, Jensen F, Daugaard G, Nielsen FC.

BMC Cancer. 2015 Mar 19;15:151. doi: 10.1186/s12885-015-1128-x.


Cellular origin of prognostic chromosomal aberrations in AML patients.

Mora-Jensen H, Jendholm J, Rapin N, Andersen MK, Roug AS, Bagger FO, Bullinger L, Winther O, Borregaard N, Porse BT, Theilgaard-Mönch K.

Leukemia. 2015 Aug;29(8):1785-9. doi: 10.1038/leu.2015.30. Epub 2015 Feb 11. No abstract available.


The middle ear immune defense changes with age.

Nielsen MC, Friis M, Martin-Bertelsen T, Winther O, Friis-Hansen L, Cayé-Thomasen P.

Eur Arch Otorhinolaryngol. 2016 Jan;273(1):81-6. doi: 10.1007/s00405-015-3493-0. Epub 2015 Jan 7.


Down-Regulation of miR-129-5p and the let-7 Family in Neuroendocrine Tumors and Metastases Leads to Up-Regulation of Their Targets Egr1, G3bp1, Hmga2 and Bach1.

Døssing KB, Binderup T, Kaczkowski B, Jacobsen A, Rossing M, Winther O, Federspiel B, Knigge U, Kjær A, Friis-Hansen L.

Genes (Basel). 2014 Dec 24;6(1):1-21. doi: 10.3390/genes6010001.


Tumor antigens as proteogenomic biomarkers in invasive ductal carcinomas.

Olsen L, Campos B, Winther O, Sgroi DC, Karger BL, Brusic V.

BMC Med Genomics. 2014;7 Suppl 3:S2. doi: 10.1186/1755-8794-7-S3-S2. Epub 2014 Dec 8.


Differential gene expression in the otic capsule and the middle ear--an annotation of bone-related signaling genes.

Nielsen MC, Martin-Bertelsen T, Friis M, Winther O, Friis-Hansen L, Rye-Jørgensen N, Bloch S, Sørensen MS.

Otol Neurotol. 2015 Apr;36(4):727-32. doi: 10.1097/MAO.0000000000000664.


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