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Chloroplast DNA Structural Variation, Phylogeny, and Age of Divergence among Diploid Cotton Species.

Chen Z, Feng K, Grover CE, Li P, Liu F, Wang Y, Xu Q, Shang M, Zhou Z, Cai X, Wang X, Wendel JF, Wang K, Hua J.

PLoS One. 2016 Jun 16;11(6):e0157183. doi: 10.1371/journal.pone.0157183.


Independent Domestication of Two Old World Cotton Species.

Renny-Byfield S, Page JT, Udall JA, Sanders WS, Peterson DG, Arick MA 2nd, Grover CE, Wendel JF.

Genome Biol Evol. 2016 Jul 2;8(6):1940-7. doi: 10.1093/gbe/evw129.


Evolution of plant genome architecture.

Wendel JF, Jackson SA, Meyers BC, Wing RA.

Genome Biol. 2016 Mar 1;17:37. doi: 10.1186/s13059-016-0908-1. Review.


Rapid evolutionary divergence of Gossypium barbadense and G. hirsutum mitochondrial genomes.

Tang M, Chen Z, Grover CE, Wang Y, Li S, Liu G, Ma Z, Wendel JF, Hua J.

BMC Genomics. 2015 Oct 12;16:770. doi: 10.1186/s12864-015-1988-0.


Gene-expression novelty in allopolyploid cotton: a proteomic perspective.

Hu G, Koh J, Yoo MJ, Chen S, Wendel JF.

Genetics. 2015 May;200(1):91-104. doi: 10.1534/genetics.115.174367.


CenH3 evolution in diploids and polyploids of three angiosperm genera.

Masonbrink RE, Gallagher JP, Jareczek JJ, Renny-Byfield S, Grover CE, Gong L, Wendel JF.

BMC Plant Biol. 2014 Dec 30;14:383. doi: 10.1186/s12870-014-0383-3.


Control of cotton fibre elongation by a homeodomain transcription factor GhHOX3.

Shan CM, Shangguan XX, Zhao B, Zhang XF, Chao LM, Yang CQ, Wang LJ, Zhu HY, Zeng YD, Guo WZ, Zhou BL, Hu GJ, Guan XY, Chen ZJ, Wendel JF, Zhang TZ, Chen XY.

Nat Commun. 2014 Nov 21;5:5519. doi: 10.1038/ncomms6519.


Cytonuclear evolution of rubisco in four allopolyploid lineages.

Gong L, Olson M, Wendel JF.

Mol Biol Evol. 2014 Oct;31(10):2624-36. doi: 10.1093/molbev/msu207.


Evolution of the BBAA component of bread wheat during its history at the allohexaploid level.

Zhang H, Zhu B, Qi B, Gou X, Dong Y, Xu C, Zhang B, Huang W, Liu C, Wang X, Yang C, Zhou H, Kashkush K, Feldman M, Wendel JF, Liu B.

Plant Cell. 2014 Jul;26(7):2761-76. doi: 10.1105/tpc.114.128439.


The legacy of diploid progenitors in allopolyploid gene expression patterns.

Buggs RJ, Wendel JF, Doyle JJ, Soltis DE, Soltis PS, Coate JE.

Philos Trans R Soc Lond B Biol Sci. 2014 Aug 5;369(1648). pii: 20130354. doi: 10.1098/rstb.2013.0354. Review.


Contemporary and future studies in plant speciation, morphological/floral evolution and polyploidy: honouring the scientific contributions of Leslie D. Gottlieb to plant evolutionary biology.

Crawford DJ, Doyle JJ, Soltis DE, Soltis PS, Wendel JF.

Philos Trans R Soc Lond B Biol Sci. 2014 Aug 5;369(1648). pii: 20130341. doi: 10.1098/rstb.2013.0341. No abstract available.


Genome-wide disruption of gene expression in allopolyploids but not hybrids of rice subspecies.

Xu C, Bai Y, Lin X, Zhao N, Hu L, Gong Z, Wendel JF, Liu B.

Mol Biol Evol. 2014 May;31(5):1066-76. doi: 10.1093/molbev/msu085.


Ancient gene duplicates in Gossypium (cotton) exhibit near-complete expression divergence.

Renny-Byfield S, Gallagher JP, Grover CE, Szadkowski E, Page JT, Udall JA, Wang X, Paterson AH, Wendel JF.

Genome Biol Evol. 2014 Mar;6(3):559-71. doi: 10.1093/gbe/evu037.


Comparative evolutionary and developmental dynamics of the cotton (Gossypium hirsutum) fiber transcriptome.

Yoo MJ, Wendel JF.

PLoS Genet. 2014 Jan;10(1):e1004073. doi: 10.1371/journal.pgen.1004073.


Composition and expression of conserved microRNA genes in diploid cotton (Gossypium) species.

Gong L, Kakrana A, Arikit S, Meyers BC, Wendel JF.

Genome Biol Evol. 2013;5(12):2449-59. doi: 10.1093/gbe/evt196.


Insights into the evolution of cotton diploids and polyploids from whole-genome re-sequencing.

Page JT, Huynh MD, Liechty ZS, Grupp K, Stelly D, Hulse AM, Ashrafi H, Van Deynze A, Wendel JF, Udall JA.

G3 (Bethesda). 2013 Oct 3;3(10):1809-18. doi: 10.1534/g3.113.007229.


Crop plants as models for understanding plant adaptation and diversification.

Olsen KM, Wendel JF.

Front Plant Sci. 2013 Aug 1;4:290. doi: 10.3389/fpls.2013.00290.


Homoeolog expression bias and expression level dominance in allopolyploid cotton.

Yoo MJ, Szadkowski E, Wendel JF.

Heredity (Edinb). 2013 Feb;110(2):171-80. doi: 10.1038/hdy.2012.94.


Duplicate gene evolution, homoeologous recombination, and transcriptome characterization in allopolyploid cotton.

Flagel LE, Wendel JF, Udall JA.

BMC Genomics. 2012 Jul 6;13:302. doi: 10.1186/1471-2164-13-302.


Parallel up-regulation of the profilin gene family following independent domestication of diploid and allopolyploid cotton (Gossypium).

Bao Y, Hu G, Flagel LE, Salmon A, Bezanilla M, Paterson AH, Wang Z, Wendel JF.

Proc Natl Acad Sci U S A. 2011 Dec 27;108(52):21152-7. doi: 10.1073/pnas.1115926109.

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