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Items: 1 to 20 of 114

1.

Joint Analysis of Nuclear and Mitochondrial Variants in Age-Related Macular Degeneration Identifies Novel Loci TRPM1 and ABHD2/RLBP1.

Persad PJ, Heid IM, Weeks DE, Baird PN, de Jong EK, Haines JL, Pericak-Vance MA, Scott WK; for the International Age-Related Macular Degeneration Genomics Consortium (IAMDGC).

Invest Ophthalmol Vis Sci. 2017 Aug 1;58(10):4027-4038. doi: 10.1167/iovs.17-21734.

2.

Genome-wide approach identifies a novel gene-maternal pre-pregnancy BMI interaction on preterm birth.

Hong X, Hao K, Ji H, Peng S, Sherwood B, Di Narzo A, Tsai HJ, Liu X, Burd I, Wang G, Ji Y, Caruso D, Mao G, Bartell TR, Zhang Z, Pearson C, Heffner L, Cerda S, Beaty TH, Fallin MD, Lee-Parritz A, Zuckerman B, Weeks DE, Wang X.

Nat Commun. 2017 Jun 9;8:15608. doi: 10.1038/ncomms15608.

3.

A thrifty variant in CREBRF strongly influences body mass index in Samoans.

Minster RL, Hawley NL, Su CT, Sun G, Kershaw EE, Cheng H, Buhule OD, Lin J, Reupena MS, Viali S, Tuitele J, Naseri T, Urban Z, Deka R, Weeks DE, McGarvey ST.

Nat Genet. 2016 Sep;48(9):1049-1054. doi: 10.1038/ng.3620. Epub 2016 Jul 25.

4.

A Comparison Study of Fixed and Mixed Effect Models for Gene Level Association Studies of Complex Traits.

Fan R, Chiu CY, Jung J, Weeks DE, Wilson AF, Bailey-Wilson JE, Amos CI, Chen Z, Mills JL, Xiong M.

Genet Epidemiol. 2016 Dec;40(8):702-721. doi: 10.1002/gepi.21984. Epub 2016 Jul 4.

5.

The impact of genotype calling errors on family-based studies.

Yan Q, Chen R, Sutcliffe JS, Cook EH, Weeks DE, Li B, Chen W.

Sci Rep. 2016 Jun 22;6:28323. doi: 10.1038/srep28323.

6.

Epigenome-wide association study links site-specific DNA methylation changes with cow's milk allergy.

Hong X, Ladd-Acosta C, Hao K, Sherwood B, Ji H, Keet CA, Kumar R, Caruso D, Liu X, Wang G, Chen Z, Ji Y, Mao G, Walker SO, Bartell TR, Ji Z, Sun Y, Tsai HJ, Pongracic JA, Weeks DE, Wang X.

J Allergy Clin Immunol. 2016 Sep;138(3):908-911.e9. doi: 10.1016/j.jaci.2016.01.056. Epub 2016 Apr 25. No abstract available.

7.

Rare-Variant Kernel Machine Test for Longitudinal Data from Population and Family Samples.

Yan Q, Weeks DE, Tiwari HK, Yi N, Zhang K, Gao G, Lin WY, Lou XY, Chen W, Liu N.

Hum Hered. 2015;80(3):126-38. doi: 10.1159/000445057. Epub 2016 Apr 29.

8.

Gene-Based Association Analysis for Censored Traits Via Fixed Effect Functional Regressions.

Fan R, Wang Y, Yan Q, Ding Y, Weeks DE, Lu Z, Ren H, Cook RJ, Xiong M, Swaroop A, Chew EY, Chen W.

Genet Epidemiol. 2016 Feb;40(2):133-43. doi: 10.1002/gepi.21947. Epub 2016 Jan 18.

9.

A Pipeline for Classifying Relationships Using Dense SNP/SNV Data and Putative Pedigree Information.

Zeng Z, Weeks DE, Chen W, Mukhopadhyay N, Feingold E.

Genet Epidemiol. 2016 Feb;40(2):161-71. doi: 10.1002/gepi.21948. Epub 2015 Dec 28.

10.

A large genome-wide association study of age-related macular degeneration highlights contributions of rare and common variants.

Fritsche LG, Igl W, Bailey JN, Grassmann F, Sengupta S, Bragg-Gresham JL, Burdon KP, Hebbring SJ, Wen C, Gorski M, Kim IK, Cho D, Zack D, Souied E, Scholl HP, Bala E, Lee KE, Hunter DJ, Sardell RJ, Mitchell P, Merriam JE, Cipriani V, Hoffman JD, Schick T, Lechanteur YT, Guymer RH, Johnson MP, Jiang Y, Stanton CM, Buitendijk GH, Zhan X, Kwong AM, Boleda A, Brooks M, Gieser L, Ratnapriya R, Branham KE, Foerster JR, Heckenlively JR, Othman MI, Vote BJ, Liang HH, Souzeau E, McAllister IL, Isaacs T, Hall J, Lake S, Mackey DA, Constable IJ, Craig JE, Kitchner TE, Yang Z, Su Z, Luo H, Chen D, Ouyang H, Flagg K, Lin D, Mao G, Ferreyra H, Stark K, von Strachwitz CN, Wolf A, Brandl C, Rudolph G, Olden M, Morrison MA, Morgan DJ, Schu M, Ahn J, Silvestri G, Tsironi EE, Park KH, Farrer LA, Orlin A, Brucker A, Li M, Curcio CA, Mohand-Saïd S, Sahel JA, Audo I, Benchaboune M, Cree AJ, Rennie CA, Goverdhan SV, Grunin M, Hagbi-Levi S, Campochiaro P, Katsanis N, Holz FG, Blond F, Blanché H, Deleuze JF, Igo RP Jr, Truitt B, Peachey NS, Meuer SM, Myers CE, Moore EL, Klein R, Hauser MA, Postel EA, Courtenay MD, Schwartz SG, Kovach JL, Scott WK, Liew G, Tan AG, Gopinath B, Merriam JC, Smith RT, Khan JC, Shahid H, Moore AT, McGrath JA, Laux R, Brantley MA Jr, Agarwal A, Ersoy L, Caramoy A, Langmann T, Saksens NT, de Jong EK, Hoyng CB, Cain MS, Richardson AJ, Martin TM, Blangero J, Weeks DE, Dhillon B, van Duijn CM, Doheny KF, Romm J, Klaver CC, Hayward C, Gorin MB, Klein ML, Baird PN, den Hollander AI, Fauser S, Yates JR, Allikmets R, Wang JJ, Schaumberg DA, Klein BE, Hagstrom SA, Chowers I, Lotery AJ, Léveillard T, Zhang K, Brilliant MH, Hewitt AW, Swaroop A, Chew EY, Pericak-Vance MA, DeAngelis M, Stambolian D, Haines JL, Iyengar SK, Weber BH, Abecasis GR, Heid IM.

Nat Genet. 2016 Feb;48(2):134-43. doi: 10.1038/ng.3448. Epub 2015 Dec 21.

11.

Enhanced B Cell Alloantigen Presentation and Its Epigenetic Dysregulation in Liver Transplant Rejection.

Ningappa M, Ashokkumar C, Higgs BW, Sun Q, Jaffe R, Mazariegos G, Li D, Weeks DE, Subramaniam S, Ferrell R, Hakonarson H, Sindhi R.

Am J Transplant. 2016 Feb;16(2):497-508. doi: 10.1111/ajt.13509. Epub 2015 Dec 11.

12.

Associating Multivariate Quantitative Phenotypes with Genetic Variants in Family Samples with a Novel Kernel Machine Regression Method.

Yan Q, Weeks DE, Celedón JC, Tiwari HK, Li B, Wang X, Lin WY, Lou XY, Gao G, Chen W, Liu N.

Genetics. 2015 Dec;201(4):1329-39. doi: 10.1534/genetics.115.178590. Epub 2015 Oct 19.

13.

Predisposition to Childhood Otitis Media and Genetic Polymorphisms within the Toll-Like Receptor 4 (TLR4) Locus.

Hafrén L, Einarsdottir E, Kentala E, Hammarén-Malmi S, Bhutta MF, MacArthur CJ, Wilmot B, Casselbrant M, Conley YP, Weeks DE, Mandel EM, Vaarala O, Kallio A, Melin M, Nieminen JK, Leinonen E, Kere J, Mattila PS.

PLoS One. 2015 Jul 15;10(7):e0132551. doi: 10.1371/journal.pone.0132551. eCollection 2015.

14.

Genetic ME-a visualization application for merging and editing pedigrees for genetic studies.

Bui DK, Jiang Y, Wei X, Ortube MC, Weeks DE, Conley YP, Gorin MB.

BMC Res Notes. 2015 Jun 16;8:241. doi: 10.1186/s13104-015-1131-y.

15.

dbVOR: a database system for importing pedigree, phenotype and genotype data and exporting selected subsets.

Baron RV, Conley YP, Gorin MB, Weeks DE.

BMC Bioinformatics. 2015 Mar 18;16:91. doi: 10.1186/s12859-015-0505-4.

16.

Genome-wide association study identifies peanut allergy-specific loci and evidence of epigenetic mediation in US children.

Hong X, Hao K, Ladd-Acosta C, Hansen KD, Tsai HJ, Liu X, Xu X, Thornton TA, Caruso D, Keet CA, Sun Y, Wang G, Luo W, Kumar R, Fuleihan R, Singh AM, Kim JS, Story RE, Gupta RS, Gao P, Chen Z, Walker SO, Bartell TR, Beaty TH, Fallin MD, Schleimer R, Holt PG, Nadeau KC, Wood RA, Pongracic JA, Weeks DE, Wang X.

Nat Commun. 2015 Feb 24;6:6304. doi: 10.1038/ncomms7304.

17.

Mega2: validated data-reformatting for linkage and association analyses.

Baron RV, Kollar C, Mukhopadhyay N, Weeks DE.

Source Code Biol Med. 2014 Dec 5;9(1):26. doi: 10.1186/s13029-014-0026-y. eCollection 2014.

18.

Endophenotypes for Age-Related Macular Degeneration: Extending Our Reach into the Preclinical Stages of Disease.

Gorin MB, Weeks DE, Baron RV, Conley YP, Ortube MC, Nusinowitz S.

J Clin Med. 2014 Nov 28;3(4):1335-56. doi: 10.3390/jcm3041335.

19.

Identification of epidermal growth factor receptor (EGFR) genetic variants that modify risk for head and neck squamous cell carcinoma.

Fung C, Zhou P, Joyce S, Trent K, Yuan JM, Grandis JR, Weissfeld JL, Romkes M, Weeks DE, Egloff AM.

Cancer Lett. 2015 Feb 28;357(2):549-56. doi: 10.1016/j.canlet.2014.12.008. Epub 2014 Dec 12.

20.

Stratified randomization controls better for batch effects in 450K methylation analysis: a cautionary tale.

Buhule OD, Minster RL, Hawley NL, Medvedovic M, Sun G, Viali S, Deka R, McGarvey ST, Weeks DE.

Front Genet. 2014 Oct 13;5:354. doi: 10.3389/fgene.2014.00354. eCollection 2014.

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