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Items: 1 to 20 of 22

1.

Expanding the view on the evolution of the nematode dauer signalling pathways: refinement through gene gain and pathway co-option.

Gilabert A, Curran DM, Harvey SC, Wasmuth JD.

BMC Genomics. 2016 Jun 27;17:476. doi: 10.1186/s12864-016-2770-7.

2.

Exploring the Gastrointestinal "Nemabiome": Deep Amplicon Sequencing to Quantify the Species Composition of Parasitic Nematode Communities.

Avramenko RW, Redman EM, Lewis R, Yazwinski TA, Wasmuth JD, Gilleard JS.

PLoS One. 2015 Dec 2;10(12):e0143559. doi: 10.1371/journal.pone.0143559. eCollection 2015.

3.

Does the arthropod microbiota impact the establishment of vector-borne diseases in mammalian hosts?

Finney CA, Kamhawi S, Wasmuth JD.

PLoS Pathog. 2015 Apr 9;11(4):e1004646. doi: 10.1371/journal.ppat.1004646. eCollection 2015 Apr.

4.

Morphological variability and molecular identification of Uncinaria spp. (Nematoda: Ancylostomatidae) from grizzly and black bears: new species or phenotypic plasticity?

Catalano S, Lejeune M, van Paridon B, Pagan CA, Wasmuth JD, Tizzani P, Duignan PJ, Nadler SA.

J Parasitol. 2015 Apr;101(2):182-92. doi: 10.1645/14-621.1. Epub 2014 Dec 30.

PMID:
25548982
5.

Kablammo: an interactive, web-based BLAST results visualizer.

Wintersinger JA, Wasmuth JD.

Bioinformatics. 2015 Apr 15;31(8):1305-6. doi: 10.1093/bioinformatics/btu808. Epub 2014 Dec 5.

PMID:
25481007
6.

Figmop: a profile HMM to identify genes and bypass troublesome gene models in draft genomes.

Curran DM, Gilleard JS, Wasmuth JD.

Bioinformatics. 2014 Nov 15;30(22):3266-7. doi: 10.1093/bioinformatics/btu544. Epub 2014 Aug 12.

PMID:
25115706
7.

Realizing the promise of parasite genomics.

Wasmuth JD.

Trends Parasitol. 2014 Jul;30(7):321-3. doi: 10.1016/j.pt.2014.04.008.

PMID:
24981572
8.

The genome and transcriptome of Haemonchus contortus, a key model parasite for drug and vaccine discovery.

Laing R, Kikuchi T, Martinelli A, Tsai IJ, Beech RN, Redman E, Holroyd N, Bartley DJ, Beasley H, Britton C, Curran D, Devaney E, Gilabert A, Hunt M, Jackson F, Johnston SL, Kryukov I, Li K, Morrison AA, Reid AJ, Sargison N, Saunders GI, Wasmuth JD, Wolstenholme A, Berriman M, Gilleard JS, Cotton JA.

Genome Biol. 2013 Aug 28;14(8):R88. doi: 10.1186/gb-2013-14-8-r88.

9.

Unravelling parasitic nematode natural history using population genetics.

Gilabert A, Wasmuth JD.

Trends Parasitol. 2013 Sep;29(9):438-48. doi: 10.1016/j.pt.2013.07.006. Epub 2013 Aug 12. Review.

PMID:
23948430
10.

The genomes of four tapeworm species reveal adaptations to parasitism.

Tsai IJ, Zarowiecki M, Holroyd N, Garciarrubio A, Sánchez-Flores A, Brooks KL, Tracey A, Bobes RJ, Fragoso G, Sciutto E, Aslett M, Beasley H, Bennett HM, Cai X, Camicia F, Clark R, Cucher M, De Silva N, Day TA, Deplazes P, Estrada K, Fernández C, Holland PWH, Hou J, Hu S, Huckvale T, Hung SS, Kamenetzky L, Keane JA, Kiss F, Koziol U, Lambert O, Liu K, Luo X, Luo Y, Macchiaroli N, Nichol S, Paps J, Parkinson J, Pouchkina-Stantcheva N, Riddiford N, Rosenzvit M, Salinas G, Wasmuth JD, Zamanian M, Zheng Y; Taenia solium Genome Consortium, Cai J, Soberón X, Olson PD, Laclette JP, Brehm K, Berriman M.

Nature. 2013 Apr 4;496(7443):57-63. doi: 10.1038/nature12031. Epub 2013 Mar 13.

11.

Characterization and comparative analysis of the complete Haemonchus contortus β-tubulin gene family and implications for benzimidazole resistance in strongylid nematodes.

Saunders GI, Wasmuth JD, Beech R, Laing R, Hunt M, Naghra H, Cotton JA, Berriman M, Britton C, Gilleard JS.

Int J Parasitol. 2013 May;43(6):465-75. doi: 10.1016/j.ijpara.2012.12.011. Epub 2013 Feb 14.

PMID:
23416426
12.

HIV infection deregulates Tim-3 expression on innate cells: combination antiretroviral therapy results in partial restoration.

Finney CA, Ayi K, Wasmuth JD, Sheth PM, Kaul R, Loutfy M, Kain KC, Serghides L.

J Acquir Immune Defic Syndr. 2013 Jun 1;63(2):161-7. doi: 10.1097/QAI.0b013e318285cf13.

PMID:
23314411
13.

HIV infection deregulates innate immunity to malaria despite combination antiretroviral therapy.

Finney CA, Ayi K, Wasmuth JD, Sheth PM, Kaul R, Loutfy MR, Kain KC, Serghides L.

AIDS. 2013 Jan 28;27(3):325-35. doi: 10.1097/QAD.0b013e32835b3dfa.

PMID:
23291537
14.

A transcriptomic analysis of Echinococcus granulosus larval stages: implications for parasite biology and host adaptation.

Parkinson J, Wasmuth JD, Salinas G, Bizarro CV, Sanford C, Berriman M, Ferreira HB, Zaha A, Blaxter ML, Maizels RM, Fernández C.

PLoS Negl Trop Dis. 2012;6(11):e1897. doi: 10.1371/journal.pntd.0001897. Epub 2012 Nov 29. Erratum in: PLoS Negl Trop Dis. 2012 December; 6(12): 10.1371/annotation/984cd209-4e98-467c-b462-c11090e43be7.

15.

Integrated bioinformatic and targeted deletion analyses of the SRS gene superfamily identify SRS29C as a negative regulator of Toxoplasma virulence.

Wasmuth JD, Pszenny V, Haile S, Jansen EM, Gast AT, Sher A, Boyle JP, Boulanger MJ, Parkinson J, Grigg ME.

MBio. 2012 Nov 13;3(6). pii: e00321-12. doi: 10.1128/mBio.00321-12.

16.

The VPS33B-binding protein VPS16B is required in megakaryocyte and platelet α-granule biogenesis.

Urban D, Li L, Christensen H, Pluthero FG, Chen SZ, Puhacz M, Garg PM, Lanka KK, Cummings JJ, Kramer H, Wasmuth JD, Parkinson J, Kahr WH.

Blood. 2012 Dec 13;120(25):5032-40. doi: 10.1182/blood-2012-05-431205. Epub 2012 Sep 21.

17.

Comparative genomics of the apicomplexan parasites Toxoplasma gondii and Neospora caninum: Coccidia differing in host range and transmission strategy.

Reid AJ, Vermont SJ, Cotton JA, Harris D, Hill-Cawthorne GA, Könen-Waisman S, Latham SM, Mourier T, Norton R, Quail MA, Sanders M, Shanmugam D, Sohal A, Wasmuth JD, Brunk B, Grigg ME, Howard JC, Parkinson J, Roos DS, Trees AJ, Berriman M, Pain A, Wastling JM.

PLoS Pathog. 2012;8(3):e1002567. doi: 10.1371/journal.ppat.1002567. Epub 2012 Mar 22.

18.

Identification of two novel coccidian species shed by California sea lions (Zalophus californianus).

Carlson-Bremer D, Johnson CK, Miller RH, Gulland FM, Conrad PA, Wasmuth JD, Colegrove KM, Grigg ME.

J Parasitol. 2012 Apr;98(2):347-54. doi: 10.1645/GE-2752.1. Epub 2011 Nov 17.

19.

Intergenic sequence comparison of Escherichia coli isolates reveals lifestyle adaptations but not host specificity.

White AP, Sibley KA, Sibley CD, Wasmuth JD, Schaefer R, Surette MG, Edge TA, Neumann NF.

Appl Environ Microbiol. 2011 Nov;77(21):7620-32. doi: 10.1128/AEM.05909-11. Epub 2011 Sep 9.

20.

Patterns of molecular evolution in Caenorhabditis preclude ancient origins of selfing.

Cutter AD, Wasmuth JD, Washington NL.

Genetics. 2008 Apr;178(4):2093-104. doi: 10.1534/genetics.107.085787.

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