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Items: 1 to 20 of 131

1.

A strategy for evaluating pathway analysis methods.

Yu C, Woo HJ, Yu X, Oyama T, Wallqvist A, Reifman J.

BMC Bioinformatics. 2017 Oct 13;18(1):453. doi: 10.1186/s12859-017-1866-7.

2.

Combinatorial peptide-based epitope mapping from Ebola virus DNA vaccines and infections reveals residue-level determinants of antibody binding.

Ripoll DR, Mitchell DAJ, Dupuy LC, Wallqvist A, Schmaljohn C, Chaudhury S.

Hum Vaccin Immunother. 2017 Sep 18:1-14. doi: 10.1080/21645515.2017.1360454. [Epub ahead of print]

PMID:
28922082
3.

Quantitative Analysis of Repertoire-Scale Immunoglobulin Properties in Vaccine-Induced B-Cell Responses.

Khavrutskii IV, Chaudhury S, Stronsky SM, Lee DW, Benko JG, Wallqvist A, Bavari S, Cooper CL.

Front Immunol. 2017 Aug 14;8:910. doi: 10.3389/fimmu.2017.00910. eCollection 2017.

4.

Delayed fractional dose regimen of the RTS,S/AS01 malaria vaccine candidate enhances an IgG4 response that inhibits serum opsonophagocytosis.

Chaudhury S, Regules JA, Darko CA, Dutta S, Wallqvist A, Waters NC, Jongert E, Lemiale F, Bergmann-Leitner ES.

Sci Rep. 2017 Aug 11;7(1):7998. doi: 10.1038/s41598-017-08526-5.

5.

Molecular Structure-Based Large-Scale Prediction of Chemical-Induced Gene Expression Changes.

Liu R, AbdulHameed MDM, Wallqvist A.

J Chem Inf Model. 2017 Sep 25;57(9):2194-2202. doi: 10.1021/acs.jcim.7b00281. Epub 2017 Aug 22.

PMID:
28796500
6.

Epitope mapping of Ebola virus dominant and subdominant glycoprotein epitopes facilitates construction of an epitope-based DNA vaccine able to focus the antibody response in mice.

Mitchell DAJ, Dupuy LC, Sanchez-Lockhart M, Palacios G, Back JW, Shimanovskaya K, Chaudhury S, Ripoll DR, Wallqvist A, Schmaljohn CS.

Hum Vaccin Immunother. 2017 Jul 12:1-11. doi: 10.1080/21645515.2017.1347740. [Epub ahead of print]

PMID:
28699812
7.

Data-driven prediction of adverse drug reactions induced by drug-drug interactions.

Liu R, AbdulHameed MDM, Kumar K, Yu X, Wallqvist A, Reifman J.

BMC Pharmacol Toxicol. 2017 Jun 8;18(1):44. doi: 10.1186/s40360-017-0153-6.

8.

Using a genome-scale metabolic network model to elucidate the mechanism of chloroquine action in Plasmodium falciparum.

Tewari SG, Prigge ST, Reifman J, Wallqvist A.

Int J Parasitol Drugs Drug Resist. 2017 Aug;7(2):138-146. doi: 10.1016/j.ijpddr.2017.03.004. Epub 2017 Mar 22.

9.

Dengue virus antibody database: Systematically linking serotype-specificity with epitope mapping in dengue virus.

Chaudhury S, Gromowski GD, Ripoll DR, Khavrutskii IV, Desai V, Wallqvist A.

PLoS Negl Trop Dis. 2017 Feb 21;11(2):e0005395. doi: 10.1371/journal.pntd.0005395. eCollection 2017 Feb.

10.

Reconciled rat and human metabolic networks for comparative toxicogenomics and biomarker predictions.

Blais EM, Rawls KD, Dougherty BV, Li ZI, Kolling GL, Ye P, Wallqvist A, Papin JA.

Nat Commun. 2017 Feb 8;8:14250. doi: 10.1038/ncomms14250.

11.

BRILIA: Integrated Tool for High-Throughput Annotation and Lineage Tree Assembly of B-Cell Repertoires.

Lee DW, Khavrutskii IV, Wallqvist A, Bavari S, Cooper CL, Chaudhury S.

Front Immunol. 2017 Jan 17;7:681. doi: 10.3389/fimmu.2016.00681. eCollection 2016.

12.

Using Chemical-Induced Gene Expression in Cultured Human Cells to Predict Chemical Toxicity.

Liu R, Yu X, Wallqvist A.

Chem Res Toxicol. 2016 Nov 21;29(11):1883-1893. Epub 2016 Nov 4.

PMID:
27768846
13.

Modeling the Role of Epitope Arrangement on Antibody Binding Stoichiometry in Flaviviruses.

Ripoll DR, Khavrutskii I, Wallqvist A, Chaudhury S.

Biophys J. 2016 Oct 18;111(8):1641-1654. doi: 10.1016/j.bpj.2016.09.003.

14.

Mining kidney toxicogenomic data by using gene co-expression modules.

AbdulHameed MD, Ippolito DL, Stallings JD, Wallqvist A.

BMC Genomics. 2016 Oct 10;17(1):790.

15.

DBSecSys 2.0: a database of Burkholderia mallei and Burkholderia pseudomallei secretion systems.

Memišević V, Kumar K, Zavaljevski N, DeShazer D, Wallqvist A, Reifman J.

BMC Bioinformatics. 2016 Sep 20;17:387. doi: 10.1186/s12859-016-1242-z.

16.

Predicting Rat and Human Pregnane X Receptor Activators Using Bayesian Classification Models.

AbdulHameed MD, Ippolito DL, Wallqvist A.

Chem Res Toxicol. 2016 Oct 17;29(10):1729-1740. Epub 2016 Sep 23.

PMID:
27603675
17.

Metabolic host responses to malarial infection during the intraerythrocytic developmental cycle.

Wallqvist A, Fang X, Tewari SG, Ye P, Reifman J.

BMC Syst Biol. 2016 Aug 8;10(1):58. doi: 10.1186/s12918-016-0291-2.

18.

The biological function of antibodies induced by the RTS,S/AS01 malaria vaccine candidate is determined by their fine specificity.

Chaudhury S, Ockenhouse CF, Regules JA, Dutta S, Wallqvist A, Jongert E, Waters NC, Lemiale F, Bergmann-Leitner E.

Malar J. 2016 May 31;15:301. doi: 10.1186/s12936-016-1348-9.

19.

Phenotypic Characterization of a Novel Virulence-Factor Deletion Strain of Burkholderia mallei That Provides Partial Protection against Inhalational Glanders in Mice.

Bozue JA, Chaudhury S, Amemiya K, Chua J, Cote CK, Toothman RG, Dankmeyer JL, Klimko CP, Wilhelmsen CL, Raymond JW, Zavaljevski N, Reifman J, Wallqvist A.

Front Cell Infect Microbiol. 2016 Feb 26;6:21. doi: 10.3389/fcimb.2016.00021. eCollection 2016.

20.

Systems toxicology of chemically induced liver and kidney injuries: histopathology-associated gene co-expression modules.

Te JA, AbdulHameed MD, Wallqvist A.

J Appl Toxicol. 2016 Sep;36(9):1137-49. doi: 10.1002/jat.3278. Epub 2016 Jan 4.

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