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Items: 19

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1.

CRISPR-Cpf1 mediates efficient homology-directed repair and temperature-controlled genome editing.

Moreno-Mateos MA, Fernandez JP, Rouet R, Vejnar CE, Lane MA, Mis E, Khokha MK, Doudna JA, Giraldez AJ.

Nat Commun. 2017 Dec 8;8(1):2024. doi: 10.1038/s41467-017-01836-2.

2.

MicroRNAs Establish Uniform Traits during the Architecture of Vertebrate Embryos.

Kasper DM, Moro A, Ristori E, Narayanan A, Hill-Teran G, Fleming E, Moreno-Mateos M, Vejnar CE, Zhang J, Lee D, Gu M, Gerstein M, Giraldez A, Nicoli S.

Dev Cell. 2017 Mar 27;40(6):552-565.e5. doi: 10.1016/j.devcel.2017.02.021.

3.

RESA identifies mRNA-regulatory sequences at high resolution.

Yartseva V, Takacs CM, Vejnar CE, Lee MT, Giraldez AJ.

Nat Methods. 2017 Feb;14(2):201-207. doi: 10.1038/nmeth.4121. Epub 2016 Dec 26.

4.

Optimization Strategies for the CRISPR-Cas9 Genome-Editing System.

Vejnar CE, Moreno-Mateos MA, Cifuentes D, Bazzini AA, Giraldez AJ.

Cold Spring Harb Protoc. 2016 Oct 3;2016(10). doi: 10.1101/pdb.top090894. Review.

PMID:
27698246
5.

Optimized CRISPR-Cas9 System for Genome Editing in Zebrafish.

Vejnar CE, Moreno-Mateos MA, Cifuentes D, Bazzini AA, Giraldez AJ.

Cold Spring Harb Protoc. 2016 Oct 3;2016(10). doi: 10.1101/pdb.prot086850.

PMID:
27698232
6.

Codon identity regulates mRNA stability and translation efficiency during the maternal-to-zygotic transition.

Bazzini AA, Del Viso F, Moreno-Mateos MA, Johnstone TG, Vejnar CE, Qin Y, Yao J, Khokha MK, Giraldez AJ.

EMBO J. 2016 Oct 4;35(19):2087-2103. Epub 2016 Jul 19.

7.

CRISPRscan: designing highly efficient sgRNAs for CRISPR-Cas9 targeting in vivo.

Moreno-Mateos MA, Vejnar CE, Beaudoin JD, Fernandez JP, Mis EK, Khokha MK, Giraldez AJ.

Nat Methods. 2015 Oct;12(10):982-8. doi: 10.1038/nmeth.3543. Epub 2015 Aug 31.

8.

The common marmoset genome provides insight into primate biology and evolution.

Marmoset Genome Sequencing and Analysis Consortium.

Nat Genet. 2014 Aug;46(8):850-7. doi: 10.1038/ng.3042. Epub 2014 Jul 20.

9.

Repression of arginase-2 expression in dendritic cells by microRNA-155 is critical for promoting T cell proliferation.

Dunand-Sauthier I, Irla M, Carnesecchi S, Seguín-Estévez Q, Vejnar CE, Zdobnov EM, Santiago-Raber ML, Reith W.

J Immunol. 2014 Aug 15;193(4):1690-700. doi: 10.4049/jimmunol.1301913. Epub 2014 Jul 9.

10.

Identification of small ORFs in vertebrates using ribosome footprinting and evolutionary conservation.

Bazzini AA, Johnstone TG, Christiano R, Mackowiak SD, Obermayer B, Fleming ES, Vejnar CE, Lee MT, Rajewsky N, Walther TC, Giraldez AJ.

EMBO J. 2014 May 2;33(9):981-93. doi: 10.1002/embj.201488411. Epub 2014 Apr 4.

11.

miRmap web: Comprehensive microRNA target prediction online.

Vejnar CE, Blum M, Zdobnov EM.

Nucleic Acids Res. 2013 Jul;41(Web Server issue):W165-8. doi: 10.1093/nar/gkt430. Epub 2013 May 28.

12.

MiRmap: comprehensive prediction of microRNA target repression strength.

Vejnar CE, Zdobnov EM.

Nucleic Acids Res. 2012 Dec;40(22):11673-83. doi: 10.1093/nar/gks901. Epub 2012 Oct 2.

13.

On parameter synthesis by parallel model checking.

Barnat J, Brim L, Krejcí A, Streck A, Safránek D, Vejnár M, Vejpustek T.

IEEE/ACM Trans Comput Biol Bioinform. 2012 May-Jun;9(3):693-705. doi: 10.1109/TCBB.2011.110.

PMID:
21788679
14.

Silencing of c-Fos expression by microRNA-155 is critical for dendritic cell maturation and function.

Dunand-Sauthier I, Santiago-Raber ML, Capponi L, Vejnar CE, Schaad O, Irla M, Seguín-Estévez Q, Descombes P, Zdobnov EM, Acha-Orbea H, Reith W.

Blood. 2011 Apr 28;117(17):4490-500. doi: 10.1182/blood-2010-09-308064. Epub 2011 Mar 8.

15.

Identification of cis- and trans-regulatory variation modulating microRNA expression levels in human fibroblasts.

Borel C, Deutsch S, Letourneau A, Migliavacca E, Montgomery SB, Dimas AS, Vejnar CE, Attar H, Gagnebin M, Gehrig C, Falconnet E, Dupré Y, Dermitzakis ET, Antonarakis SE.

Genome Res. 2011 Jan;21(1):68-73. doi: 10.1101/gr.109371.110. Epub 2010 Dec 8.

16.

Loss of Dicer in Sertoli cells has a major impact on the testicular proteome of mice.

Papaioannou MD, Lagarrigue M, Vejnar CE, Rolland AD, Kühne F, Aubry F, Schaad O, Fort A, Descombes P, Neerman-Arbez M, Guillou F, Zdobnov EM, Pineau C, Nef S.

Mol Cell Proteomics. 2011 Apr;10(4):M900587MCP200. doi: 10.1074/mcp.M900587-MCP200. Epub 2010 May 13.

17.

Integration of microRNA miR-122 in hepatic circadian gene expression.

Gatfield D, Le Martelot G, Vejnar CE, Gerlach D, Schaad O, Fleury-Olela F, Ruskeepää AL, Oresic M, Esau CC, Zdobnov EM, Schibler U.

Genes Dev. 2009 Jun 1;23(11):1313-26. doi: 10.1101/gad.1781009.

18.

Sertoli cell Dicer is essential for spermatogenesis in mice.

Papaioannou MD, Pitetti JL, Ro S, Park C, Aubry F, Schaad O, Vejnar CE, Kühne F, Descombes P, Zdobnov EM, McManus MT, Guillou F, Harfe BD, Yan W, Jégou B, Nef S.

Dev Biol. 2009 Feb 1;326(1):250-9. doi: 10.1016/j.ydbio.2008.11.011. Epub 2008 Nov 28.

19.

miROrtho: computational survey of microRNA genes.

Gerlach D, Kriventseva EV, Rahman N, Vejnar CE, Zdobnov EM.

Nucleic Acids Res. 2009 Jan;37(Database issue):D111-7. doi: 10.1093/nar/gkn707. Epub 2008 Oct 15.

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