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Items: 1 to 20 of 46


A HapMap leads to a Capsicum annuum SNP infinium array: a new tool for pepper breeding.

Hulse-Kemp AM, Ashrafi H, Plieske J, Lemm J, Stoffel K, Hill T, Luerssen H, Pethiyagoda CL, Lawley CT, Ganal MW, Van Deynze A.

Hortic Res. 2016 Jul 27;3:16036. doi: 10.1038/hortres.2016.36. eCollection 2016.


New Insights on Eggplant/Tomato/Pepper Synteny and Identification of Eggplant and Pepper Orthologous QTL.

Rinaldi R, Van Deynze A, Portis E, Rotino GL, Toppino L, Hill T, Ashrafi H, Barchi L, Lanteri S.

Front Plant Sci. 2016 Jul 18;7:1031. doi: 10.3389/fpls.2016.01031. eCollection 2016.


Correction: DNA Sequence Evolution and Rare Homoeologous Conversion in Tetraploid Cotton.

Page JT, Liechty ZS, Alexander RH, Clemons K, Hulse-Kemp AM, Ashrafi H, Van Deynze A, Stelly DM, Udall JA.

PLoS Genet. 2016 Jul 22;12(7):e1006206. doi: 10.1371/journal.pgen.1006206. eCollection 2016 Jul.


Use of microsatellite markers for the assessment of bambara groundnut breeding system and varietal purity before genome sequencing.

Ho WK, Muchugi A, Muthemba S, Kariba R, Mavenkeni BO, Hendre P, Song B, Van Deynze A, Massawe F, Mayes S.

Genome. 2016 Jun;59(6):427-31. doi: 10.1139/gen-2016-0029.


DNA Sequence Evolution and Rare Homoeologous Conversion in Tetraploid Cotton.

Page JT, Liechty ZS, Alexander RH, Clemons K, Hulse-Kemp AM, Ashrafi H, Van Deynze A, Stelly DM, Udall JA.

PLoS Genet. 2016 May 11;12(5):e1006012. doi: 10.1371/journal.pgen.1006012. eCollection 2016 May. Erratum in: PLoS Genet. 2016 Jul;12(7):e1006206.


A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution.

Iorizzo M, Ellison S, Senalik D, Zeng P, Satapoomin P, Huang J, Bowman M, Iovene M, Sanseverino W, Cavagnaro P, Yildiz M, Macko-Podgórni A, Moranska E, Grzebelus E, Grzebelus D, Ashrafi H, Zheng Z, Cheng S, Spooner D, Van Deynze A, Simon P.

Nat Genet. 2016 Jun;48(6):657-66. doi: 10.1038/ng.3565. Epub 2016 May 9.


Ultra-High Density, Transcript-Based Genetic Maps of Pepper Define Recombination in the Genome and Synteny Among Related Species.

Hill T, Ashrafi H, Chin-Wo SR, Stoffel K, Truco MJ, Kozik A, Michelmore R, Van Deynze A.

G3 (Bethesda). 2015 Sep 8;5(11):2341-55. doi: 10.1534/g3.115.020040.


Development of a 63K SNP Array for Cotton and High-Density Mapping of Intraspecific and Interspecific Populations of Gossypium spp.

Hulse-Kemp AM, Lemm J, Plieske J, Ashrafi H, Buyyarapu R, Fang DD, Frelichowski J, Giband M, Hague S, Hinze LL, Kochan KJ, Riggs PK, Scheffler JA, Udall JA, Ulloa M, Wang SS, Zhu QH, Bag SK, Bhardwaj A, Burke JJ, Byers RL, Claverie M, Gore MA, Harker DB, Islam MS, Jenkins JN, Jones DC, Lacape JM, Llewellyn DJ, Percy RG, Pepper AE, Poland JA, Mohan Rai K, Sawant SV, Singh SK, Spriggs A, Taylor JM, Wang F, Yourstone SM, Zheng X, Lawley CT, Ganal MW, Van Deynze A, Wilson IW, Stelly DM.

G3 (Bethesda). 2015 Apr 22;5(6):1187-209. doi: 10.1534/g3.115.018416.


BAC-End Sequence-Based SNP Mining in Allotetraploid Cotton (Gossypium) Utilizing Resequencing Data, Phylogenetic Inferences, and Perspectives for Genetic Mapping.

Hulse-Kemp AM, Ashrafi H, Stoffel K, Zheng X, Saski CA, Scheffler BE, Fang DD, Chen ZJ, Van Deynze A, Stelly DM.

G3 (Bethesda). 2015 Apr 9;5(6):1095-105. doi: 10.1534/g3.115.017749.


Genetically engineered crops that fly under the US regulatory radar.

Camacho A, Van Deynze A, Chi-Ham C, Bennett AB.

Nat Biotechnol. 2014 Nov;32(11):1087-91. doi: 10.1038/nbt.3057. No abstract available.


Development and bin mapping of gene-associated interspecific SNPs for cotton (Gossypium hirsutum L.) introgression breeding efforts.

Hulse-Kemp AM, Ashrafi H, Zheng X, Wang F, Hoegenauer KA, Maeda AB, Yang SS, Stoffel K, Matvienko M, Clemons K, Udall JA, Van Deynze A, Jones DC, Stelly DM.

BMC Genomics. 2014 Oct 30;15:945. doi: 10.1186/1471-2164-15-945.


CaGLK2 regulates natural variation of chlorophyll content and fruit color in pepper fruit.

Brand A, Borovsky Y, Hill T, Rahman KA, Bellalou A, Van Deynze A, Paran I.

Theor Appl Genet. 2014 Oct;127(10):2139-48. doi: 10.1007/s00122-014-2367-y. Epub 2014 Aug 6.


Selection and validation of reference genes for gene expression analysis in switchgrass (Panicum virgatum) using quantitative real-time RT-PCR.

Gimeno J, Eattock N, Van Deynze A, Blumwald E.

PLoS One. 2014 Mar 12;9(3):e91474. doi: 10.1371/journal.pone.0091474. eCollection 2014.


Genome sequence of the hot pepper provides insights into the evolution of pungency in Capsicum species.

Kim S, Park M, Yeom SI, Kim YM, Lee JM, Lee HA, Seo E, Choi J, Cheong K, Kim KT, Jung K, Lee GW, Oh SK, Bae C, Kim SB, Lee HY, Kim SY, Kim MS, Kang BC, Jo YD, Yang HB, Jeong HJ, Kang WH, Kwon JK, Shin C, Lim JY, Park JH, Huh JH, Kim JS, Kim BD, Cohen O, Paran I, Suh MC, Lee SB, Kim YK, Shin Y, Noh SJ, Park J, Seo YS, Kwon SY, Kim HA, Park JM, Kim HJ, Choi SB, Bosland PW, Reeves G, Jo SH, Lee BW, Cho HT, Choi HS, Lee MS, Yu Y, Do Choi Y, Park BS, van Deynze A, Ashrafi H, Hill T, Kim WT, Pai HS, Ahn HK, Yeam I, Giovannoni JJ, Rose JK, Sørensen I, Lee SJ, Kim RW, Choi IY, Choi BS, Lim JS, Lee YH, Choi D.

Nat Genet. 2014 Mar;46(3):270-8. doi: 10.1038/ng.2877. Epub 2014 Jan 19.


QTL mapping of fruit rot resistance to the plant pathogen Phytophthora capsici in a recombinant inbred line Capsicum annuum population.

Naegele RP, Ashrafi H, Hill TA, Chin-Wo SR, Van Deynze AE, Hausbeck MK.

Phytopathology. 2014 May;104(5):479-83. doi: 10.1094/PHYTO-05-13-0143-R.


Insights into the evolution of cotton diploids and polyploids from whole-genome re-sequencing.

Page JT, Huynh MD, Liechty ZS, Grupp K, Stelly D, Hulse AM, Ashrafi H, Van Deynze A, Wendel JF, Udall JA.

G3 (Bethesda). 2013 Oct 3;3(10):1809-18. doi: 10.1534/g3.113.007229.


Genetic structure and domestication of carrot (Daucus carota subsp. sativus) (Apiaceae).

Iorizzo M, Senalik DA, Ellison SL, Grzebelus D, Cavagnaro PF, Allender C, Brunet J, Spooner DM, Van Deynze A, Simon PW.

Am J Bot. 2013 May;100(5):930-8. doi: 10.3732/ajb.1300055. Epub 2013 Apr 17.


Retrospective view of North American potato (Solanum tuberosum L.) breeding in the 20th and 21st centuries.

Hirsch CN, Hirsch CD, Felcher K, Coombs J, Zarka D, Van Deynze A, De Jong W, Veilleux RE, Jansky S, Bethke P, Douches DS, Buell CR.

G3 (Bethesda). 2013 Jun 21;3(6):1003-13. doi: 10.1534/g3.113.005595.


An Ultra High-Density, Transcript-Based, Genetic Map of Lettuce.

Truco MJ, Ashrafi H, Kozik A, van Leeuwen H, Bowers J, Reyes Chin Wo S, Stoffel K, Xu H, Hill T, Van Deynze A, Michelmore RW.

G3 (Bethesda). 2013 Mar 22. pii: g3.112.004929v3. doi: 10.1534/g3.112.004929. [Epub ahead of print]


Characterization of Capsicum annuum genetic diversity and population structure based on parallel polymorphism discovery with a 30K unigene Pepper GeneChip.

Hill TA, Ashrafi H, Reyes-Chin-Wo S, Yao J, Stoffel K, Truco MJ, Kozik A, Michelmore RW, Van Deynze A.

PLoS One. 2013;8(2):e56200. doi: 10.1371/journal.pone.0056200. Epub 2013 Feb 8.

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