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Evaluation of Genome-Enabled Selection for Bacterial Cold Water Disease Resistance Using Progeny Performance Data in Rainbow Trout: Insights on Genotyping Methods and Genomic Prediction Models.

Vallejo RL, Leeds TD, Fragomeni BO, Gao G, Hernandez AG, Misztal I, Welch TJ, Wiens GD, Palti Y.

Front Genet. 2016 May 27;7:96. doi: 10.3389/fgene.2016.00096. eCollection 2016.


Identification of single nucleotide polymorphism markers associated with bacterial cold water disease resistance and spleen size in rainbow trout.

Liu S, Vallejo RL, Palti Y, Gao G, Marancik DP, Hernandez AG, Wiens GD.

Front Genet. 2015 Sep 24;6:298. doi: 10.3389/fgene.2015.00298. eCollection 2015.


Detection and Validation of QTL Affecting Bacterial Cold Water Disease Resistance in Rainbow Trout Using Restriction-Site Associated DNA Sequencing.

Palti Y, Vallejo RL, Gao G, Liu S, Hernandez AG, Rexroad CE 3rd, Wiens GD.

PLoS One. 2015 Sep 16;10(9):e0138435. doi: 10.1371/journal.pone.0138435. eCollection 2015.


Identification of single-nucleotide polymorphism markers associated with cortisol response to crowding in rainbow trout.

Liu S, Vallejo RL, Gao G, Palti Y, Weber GM, Hernandez A, Rexroad CE 3rd.

Mar Biotechnol (NY). 2015 Jun;17(3):328-37. doi: 10.1007/s10126-015-9621-4. Epub 2015 Feb 5.


A resource of single-nucleotide polymorphisms for rainbow trout generated by restriction-site associated DNA sequencing of doubled haploids.

Palti Y, Gao G, Miller MR, Vallejo RL, Wheeler PA, Quillet E, Yao J, Thorgaard GH, Salem M, Rexroad CE 3rd.

Mol Ecol Resour. 2014 May;14(3):588-96. doi: 10.1111/1755-0998.12204. Epub 2013 Dec 13.


Detection of QTL in rainbow trout affecting survival when challenged with Flavobacterium psychrophilum.

Vallejo RL, Palti Y, Liu S, Evenhuis JP, Gao G, Rexroad CE 3rd, Wiens GD.

Mar Biotechnol (NY). 2014 Jun;16(3):349-60. doi: 10.1007/s10126-013-9553-9. Epub 2013 Nov 16.


Assessment of genetic correlation between bacterial cold water disease resistance and spleen index in a domesticated population of rainbow trout: identification of QTL on chromosome Omy19.

Wiens GD, Vallejo RL, Leeds TD, Palti Y, Hadidi S, Liu S, Evenhuis JP, Welch TJ, Rexroad CE 3rd.

PLoS One. 2013 Oct 9;8(10):e75749. doi: 10.1371/journal.pone.0075749. eCollection 2013.


Quantitative trait loci affecting response to crowding stress in an F(2) generation of rainbow trout produced through phenotypic selection.

Rexroad CE, Vallejo RL, Liu S, Palti Y, Weber GM.

Mar Biotechnol (NY). 2013 Oct;15(5):613-27. doi: 10.1007/s10126-013-9512-5. Epub 2013 May 25.


QTL affecting stress response to crowding in a rainbow trout broodstock population.

Rexroad CE 3rd, Vallejo RL, Liu S, Palti Y, Weber GM.

BMC Genet. 2012 Nov 7;13:97. doi: 10.1186/1471-2156-13-97.


RNA-Seq identifies SNP markers for growth traits in rainbow trout.

Salem M, Vallejo RL, Leeds TD, Palti Y, Liu S, Sabbagh A, Rexroad CE 3rd, Yao J.

PLoS One. 2012;7(5):e36264. doi: 10.1371/journal.pone.0036264. Epub 2012 May 4.


A first generation integrated map of the rainbow trout genome.

Palti Y, Genet C, Luo MC, Charlet A, Gao G, Hu Y, Castaño-Sánchez C, Tabet-Canale K, Krieg F, Yao J, Vallejo RL, Rexroad CE 3rd.

BMC Genomics. 2011 Apr 7;12:180. doi: 10.1186/1471-2164-12-180.


Evidence of major genes affecting resistance to bacterial cold water disease in rainbow trout using Bayesian methods of segregation analysis.

Vallejo RL, Wiens GD, Rexroad CE 3rd, Welch TJ, Evenhuis JP, Leeds TD, Janss LL, Palti Y.

J Anim Sci. 2010 Dec;88(12):3814-32. doi: 10.2527/jas.2010-2951. Epub 2010 Sep 10.


Temporal and pathogen-load dependent changes in rainbow trout (Oncorhynchus mykiss) immune response traits following challenge with biotype 2 Yersinia ruckeri.

Wiens GD, Vallejo RL.

Fish Shellfish Immunol. 2010 Oct;29(4):639-47. doi: 10.1016/j.fsi.2010.06.010. Epub 2010 Jun 30.


Response to selection for bacterial cold water disease resistance in rainbow trout.

Leeds TD, Silverstein JT, Weber GM, Vallejo RL, Palti Y, Rexroad CE 3rd, Evenhuis J, Hadidi S, Welch TJ, Wiens GD.

J Anim Sci. 2010 Jun;88(6):1936-46. doi: 10.2527/jas.2009-2538. Epub 2010 Feb 12.


Estimates of linkage disequilibrium and effective population size in rainbow trout.

Rexroad CE 3rd, Vallejo RL.

BMC Genet. 2009 Dec 14;10:83. doi: 10.1186/1471-2156-10-83.


Single nucleotide polymorphism discovery in rainbow trout by deep sequencing of a reduced representation library.

Sánchez CC, Smith TP, Wiedmann RT, Vallejo RL, Salem M, Yao J, Rexroad CE 3rd.

BMC Genomics. 2009 Nov 25;10:559. doi: 10.1186/1471-2164-10-559.


A first generation BAC-based physical map of the rainbow trout genome.

Palti Y, Luo MC, Hu Y, Genet C, You FM, Vallejo RL, Thorgaard GH, Wheeler PA, Rexroad CE 3rd.

BMC Genomics. 2009 Oct 8;10:462. doi: 10.1186/1471-2164-10-462.


Evidence of major genes affecting stress response in rainbow trout using Bayesian methods of complex segregation analysis.

Vallejo RL, Rexroad CE 3rd, Silverstein JT, Janss LL, Weber GM.

J Anim Sci. 2009 Nov;87(11):3490-505. doi: 10.2527/jas.2008-1616. Epub 2009 Jul 31.


Rainbow trout resistance to bacterial cold-water disease is moderately heritable and is not adversely correlated with growth.

Silverstein JT, Vallejo RL, Palti Y, Leeds TD, Rexroad CE 3rd, Welch TJ, Wiens GD, Ducrocq V.

J Anim Sci. 2009 Mar;87(3):860-7. doi: 10.2527/jas.2008-1157. Epub 2008 Nov 21.


A second generation genetic map for rainbow trout (Oncorhynchus mykiss).

Rexroad CE 3rd, Palti Y, Gahr SA, Vallejo RL.

BMC Genet. 2008 Nov 19;9:74. doi: 10.1186/1471-2156-9-74.

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