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Items: 1 to 20 of 31


Social networks for improving healthy weight loss behaviors for overweight and obese adults: A randomized clinical trial of the social pounds off digitally (Social POD) mobile app.

Hales S, Turner-McGrievy GM, Wilcox S, Fahim A, Davis RE, Huhns M, Valafar H.

Int J Med Inform. 2016 Oct;94:81-90. doi: 10.1016/j.ijmedinf.2016.07.003. Epub 2016 Jul 2.


A Mixed-Methods Approach to the Development, Refinement, and Pilot Testing of Social Networks for Improving Healthy Behaviors.

Hales S, Turner-McGrievy G, Fahim A, Freix A, Wilcox S, Davis RE, Huhns M, Valafar H.

JMIR Hum Factors. 2016 Feb 12;3(1):e8. doi: 10.2196/humanfactors.4512.


Structure Calculation and Reconstruction of Discrete-State Dynamics from Residual Dipolar Couplings.

Cole CA, Mukhopadhyay R, Omar H, Hennig M, Valafar H.

J Chem Theory Comput. 2016 Apr 12;12(4):1408-22. doi: 10.1021/acs.jctc.5b01091. Epub 2016 Mar 30.


Improvements to REDCRAFT: a software tool for simultaneous characterization of protein backbone structure and dynamics from residual dipolar couplings.

Simin M, Irausquin S, Cole CA, Valafar H.

J Biomol NMR. 2014 Dec;60(4):241-64. doi: 10.1007/s10858-014-9871-x. Epub 2014 Nov 18.


Dynafold: a dynamic programming approach to protein backbone structure determination from minimal sets of Residual Dipolar Couplings.

Mukhopadhyay R, Irausquin S, Schmidt C, Valafar H.

J Bioinform Comput Biol. 2014 Feb;12(1):1450002. doi: 10.1142/S0219720014500024. Epub 2014 Jan 7.


Advances in the REDCAT software package.

Schmidt C, Irausquin SJ, Valafar H.

BMC Bioinformatics. 2013 Oct 7;14:302. doi: 10.1186/1471-2105-14-302.


Protein structure validation and identification from unassigned residual dipolar coupling data using 2D-PDPA.

Fahim A, Mukhopadhyay R, Yandle R, Prestegard JH, Valafar H.

Molecules. 2013 Aug 22;18(9):10162-88. doi: 10.3390/molecules180910162.


An artificial neural network approach to improving the correlation between protein energetics and the backbone structure.

Fawcett TM, Irausquin SJ, Simin M, Valafar H.

Proteomics. 2013 Jan;13(2):230-8. doi: 10.1002/pmic.201200330. Epub 2012 Dec 23.


Multiple structure alignment with msTALI.

Shealy P, Valafar H.

BMC Bioinformatics. 2012 May 20;13:105. doi: 10.1186/1471-2105-13-105.


Backbone resonance assignment and order tensor estimation using residual dipolar couplings.

Shealy P, Liu Y, Simin M, Valafar H.

J Biomol NMR. 2011 Aug;50(4):357-69. doi: 10.1007/s10858-011-9521-5. Epub 2011 Jun 12.


Simultaneous structure and dynamics of a membrane protein using REDCRAFT: membrane-bound form of Pf1 coat protein.

Shealy P, Simin M, Park SH, Opella SJ, Valafar H.

J Magn Reson. 2010 Nov;207(1):8-16. doi: 10.1016/j.jmr.2010.07.016. Epub 2010 Jul 30.


Phage-induced alignment of membrane proteins enables the measurement and structural analysis of residual dipolar couplings with dipolar waves and lambda-maps.

Park SH, Son WS, Mukhopadhyay R, Valafar H, Opella SJ.

J Am Chem Soc. 2009 Oct 14;131(40):14140-1. doi: 10.1021/ja905640d.


Efficient and accurate estimation of relative order tensors from lambda-maps.

Mukhopadhyay R, Miao X, Shealy P, Valafar H.

J Magn Reson. 2009 Jun;198(2):236-47. doi: 10.1016/j.jmr.2009.02.014. Epub 2009 Mar 5.


Estimation of relative order tensors, and reconstruction of vectors in space using unassigned RDC data and its application.

Miao X, Mukhopadhyay R, Valafar H.

J Magn Reson. 2008 Oct;194(2):202-11. doi: 10.1016/j.jmr.2008.07.005. Epub 2008 Jul 12.


TALI: local alignment of protein structures using backbone torsion angles.

Miao X, Waddell PJ, Valafar H.

J Bioinform Comput Biol. 2008 Feb;6(1):163-81.


Rapid classification of protein structure models using unassigned backbone RDCs and probability density profile analysis (PDPA).

Bansal S, Miao X, Adams MW, Prestegard JH, Valafar H.

J Magn Reson. 2008 May;192(1):60-8. doi: 10.1016/j.jmr.2008.01.014. Epub 2008 Feb 12.


REDCRAFT: a tool for simultaneous characterization of protein backbone structure and motion from RDC data.

Bryson M, Tian F, Prestegard JH, Valafar H.

J Magn Reson. 2008 Apr;191(2):322-34. doi: 10.1016/j.jmr.2008.01.007. Epub 2008 Jan 16.


Determination of protein backbone structures from residual dipolar couplings.

Prestegard JH, Mayer KL, Valafar H, Benison GC.

Methods Enzymol. 2005;394:175-209.


Backbone solution structures of proteins using residual dipolar couplings: application to a novel structural genomics target.

Valafar H, Mayer KL, Bougault CM, LeBlond PD, Jenney FE Jr, Brereton PS, Adams MW, Prestegard JH.

J Struct Funct Genomics. 2004;5(4):241-54.


Assessment of protein alignment using 1H-1H residual dipolar coupling measurements.

Wang J, Valafar H, Prestegard JH.

J Magn Reson. 2005 Jan;172(1):85-90.

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