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Items: 1 to 20 of 52


Single-Cell Transcriptional Analysis Reveals Novel Neuronal Phenotypes and Interaction Networks Involved in the Central Circadian Clock.

Park J, Zhu H, O'Sullivan S, Ogunnaike BA, Weaver DR, Schwaber JS, Vadigepalli R.

Front Neurosci. 2016 Oct 25;10:481.


Pattern analysis uncovers a chronic ethanol-induced disruption of the switch-like dynamics of C/EBP-β and C/EBP-α genome-wide binding during liver regeneration.

Kuttippurathu L, Patra B, Cook D, Hoek JB, Vadigepalli R.

Physiol Genomics. 2017 Jan 1;49(1):11-26. doi: 10.1152/physiolgenomics.00097.2016.


Inhibition of miR-21 rescues liver regeneration after partial hepatectomy in ethanol-fed rats.

Juskeviciute E, Dippold RP, Antony AN, Swarup A, Vadigepalli R, Hoek JB.

Am J Physiol Gastrointest Liver Physiol. 2016 Nov 1;311(5):G794-G806. doi: 10.1152/ajpgi.00292.2016.


Integrated live imaging and molecular profiling of embryoid bodies reveals a synchronized progression of early differentiation.

Boxman J, Sagy N, Achanta S, Vadigepalli R, Nachman I.

Sci Rep. 2016 Aug 17;6:31623. doi: 10.1038/srep31623.


Systemic leukotriene B4 receptor antagonism lowers arterial blood pressure and improves autonomic function in the spontaneously hypertensive rat.

Marvar PJ, Hendy EB, Cruise TD, Walas D, DeCicco D, Vadigepalli R, Schwaber JS, Waki H, Murphy D, Paton JF.

J Physiol. 2016 Oct 15;594(20):5975-5989. doi: 10.1113/JP272065.


Computational Modeling of Spatiotemporal Ca(2+) Signal Propagation Along Hepatocyte Cords.

Verma A, Makadia H, Hoek JB, Ogunnaike BA, Vadigepalli R.

IEEE Trans Biomed Eng. 2016 Oct;63(10):2047-55. doi: 10.1109/TBME.2016.2550045.


HuR Contributes to TRAIL Resistance by Restricting Death Receptor 4 Expression in Pancreatic Cancer Cells.

Romeo C, Weber MC, Zarei M, DeCicco D, Chand SN, Lobo AD, Winter JM, Sawicki JA, Sachs JN, Meisner-Kober N, Yeo CJ, Vadigepalli R, Tykocinski ML, Brody JR.

Mol Cancer Res. 2016 Jul;14(7):599-611. doi: 10.1158/1541-7786.MCR-15-0448.


A novel comparative pattern analysis approach identifies chronic alcohol mediated dysregulation of transcriptomic dynamics during liver regeneration.

Kuttippurathu L, Juskeviciute E, Dippold RP, Hoek JB, Vadigepalli R.

BMC Genomics. 2016 Mar 25;17:260. doi: 10.1186/s12864-016-2492-x.


Erratum to: Molecular variability elicits a tunable switch with discrete neuromodulatory response phenotypes.

Anderson WD, Makadia HK, Vadigepalli R.

J Comput Neurosci. 2016 Feb;40(1):83. doi: 10.1007/s10827-015-0589-x. No abstract available.


Molecular variability elicits a tunable switch with discrete neuromodulatory response phenotypes.

Anderson WD, Makadia HK, Vadigepalli R.

J Comput Neurosci. 2016 Feb;40(1):65-82. doi: 10.1007/s10827-015-0584-2. Erratum in: J Comput Neurosci. 2016 Feb;40(1):83.


Systems analysis of non-parenchymal cell modulation of liver repair across multiple regeneration modes.

Cook D, Ogunnaike BA, Vadigepalli R.

BMC Syst Biol. 2015 Oct 22;9:71. doi: 10.1186/s12918-015-0220-9.


Intracellular Information Processing through Encoding and Decoding of Dynamic Signaling Features.

Makadia HK, Schwaber JS, Vadigepalli R.

PLoS Comput Biol. 2015 Oct 22;11(10):e1004563. doi: 10.1371/journal.pcbi.1004563.


In Vivo Zonal Variation and Liver Cell-Type Specific NF-κB Localization after Chronic Adaptation to Ethanol and following Partial Hepatectomy.

Nilakantan H, Kuttippurathu L, Parrish A, Hoek JB, Vadigepalli R.

PLoS One. 2015 Oct 9;10(10):e0140236. doi: 10.1371/journal.pone.0140236.


Computational modeling of cytokine signaling in microglia.

Anderson WD, Makadia HK, Greenhalgh AD, Schwaber JS, David S, Vadigepalli R.

Mol Biosyst. 2015 Dec;11(12):3332-46. doi: 10.1039/c5mb00488h.


A novel, dynamic pattern-based analysis of NF-κB binding during the priming phase of liver regeneration reveals switch-like functional regulation of target genes.

Cook DJ, Patra B, Kuttippurathu L, Hoek JB, Vadigepalli R.

Front Physiol. 2015 Jul 7;6:189. doi: 10.3389/fphys.2015.00189.


MicroRNA network changes in the brain stem underlie the development of hypertension.

DeCicco D, Zhu H, Brureau A, Schwaber JS, Vadigepalli R.

Physiol Genomics. 2015 Sep;47(9):388-99. doi: 10.1152/physiolgenomics.00047.2015.


Adiponectin fine-tuning of liver regeneration dynamics revealed through cellular network modelling.

Correnti JM, Cook D, Aksamitiene E, Swarup A, Ogunnaike B, Vadigepalli R, Hoek JB.

J Physiol. 2015 Jan 15;593(2):365-83. doi: 10.1113/jphysiol.2014.284109.


Multiscale model of dynamic neuromodulation integrating neuropeptide-induced signaling pathway activity with membrane electrophysiology.

Makadia HK, Anderson WD, Fey D, Sauter T, Schwaber JS, Vadigepalli R.

Biophys J. 2015 Jan 6;108(1):211-23. doi: 10.1016/j.bpj.2014.11.1851.


Identifying functional gene regulatory network phenotypes underlying single cell transcriptional variability.

Park J, Ogunnaike B, Schwaber J, Vadigepalli R.

Prog Biophys Mol Biol. 2015 Jan;117(1):87-98. doi: 10.1016/j.pbiomolbio.2014.11.004.

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