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Items: 1 to 20 of 153

1.

Modeling the interactions of sense and antisense Period transcripts in the mammalian circadian clock network.

Battogtokh D, Kojima S, Tyson JJ.

PLoS Comput Biol. 2018 Feb 15;14(2):e1005957. doi: 10.1371/journal.pcbi.1005957. eCollection 2018 Feb.

2.

CrossPlan: Systematic Planning of Genetic Crosses to Validate Mathematical Models.

Pratapa A, Adames N, Kraikivski P, Franzese N, Tyson JJ, Peccoud J, Murali TM, Berger B.

Bioinformatics. 2018 Feb 8. doi: 10.1093/bioinformatics/bty072. [Epub ahead of print]

PMID:
29432533
3.

GraphSpace: stimulating interdisciplinary collaborations in network biology.

Bharadwaj A, Singh DP, Ritz A, Tegge AN, Poirel CL, Kraikivski P, Adames N, Luther K, Kale SD, Peccoud J, Tyson JJ, Murali TM.

Bioinformatics. 2017 Oct 1;33(19):3134-3136. doi: 10.1093/bioinformatics/btx382.

PMID:
28957495
4.

Cell-cycle transitions: a common role for stoichiometric inhibitors.

Hopkins M, Tyson JJ, Novák B.

Mol Biol Cell. 2017 Nov 7;28(23):3437-3446. doi: 10.1091/mbc.E17-06-0349. Epub 2017 Sep 20.

5.

Spatiotemporal Models of the Asymmetric Division Cycle of Caulobacter crescentus.

Subramanian K, Tyson JJ.

Results Probl Cell Differ. 2017;61:23-48. doi: 10.1007/978-3-319-53150-2_2. Review.

PMID:
28409299
6.

Predicting network modules of cell cycle regulators using relative protein abundance statistics.

Oguz C, Watson LT, Baumann WT, Tyson JJ.

BMC Syst Biol. 2017 Feb 28;11(1):30. doi: 10.1186/s12918-017-0409-1.

7.

Cell Division: Flipping the Mitotic Switches.

Zachariae W, Tyson JJ.

Curr Biol. 2016 Dec 19;26(24):R1272-R1274. doi: 10.1016/j.cub.2016.11.007.

8.

A Stochastic Model of the Yeast Cell Cycle Reveals Roles for Feedback Regulation in Limiting Cellular Variability.

Barik D, Ball DA, Peccoud J, Tyson JJ.

PLoS Comput Biol. 2016 Dec 9;12(12):e1005230. doi: 10.1371/journal.pcbi.1005230. eCollection 2016 Dec. Erratum in: PLoS Comput Biol. 2017 Jan 12;13(1):e1005323.

9.

Model-driven experimental approach reveals the complex regulatory distribution of p53 by the circadian factor Period 2.

Gotoh T, Kim JK, Liu J, Vila-Caballer M, Stauffer PE, Tyson JJ, Finkielstein CV.

Proc Natl Acad Sci U S A. 2016 Nov 22;113(47):13516-13521. Epub 2016 Nov 9.

10.

A stochastic spatiotemporal model of a response-regulator network in the Caulobacter crescentus cell cycle.

Li F, Subramanian K, Chen M, Tyson JJ, Cao Y.

Phys Biol. 2016 Jun 25;13(3):035007. doi: 10.1088/1478-3975/13/3/035007.

PMID:
27345750
11.

Thromboembolic Events After Arthroscopic Knee Surgery: Increased Risk at High Elevation.

Tyson JJ, Bjerke BP, Genuario JW, Noonan TJ.

Arthroscopy. 2016 Nov;32(11):2350-2354. doi: 10.1016/j.arthro.2016.04.008. Epub 2016 Jun 16.

PMID:
27318777
12.

A Bistable Switch Mechanism for Stem Cell Domain Nucleation in the Shoot Apical Meristem.

Battogtokh D, Tyson JJ.

Front Plant Sci. 2016 May 23;7:674. doi: 10.3389/fpls.2016.00674. eCollection 2016. No abstract available.

13.

A Model of Yeast Cell-Cycle Regulation Based on a Standard Component Modeling Strategy for Protein Regulatory Networks.

Laomettachit T, Chen KC, Baumann WT, Tyson JJ.

PLoS One. 2016 May 17;11(5):e0153738. doi: 10.1371/journal.pone.0153738. eCollection 2016.

14.

The Epidemiology of Hip and Groin Injuries in Professional Baseball Players.

Coleman SH, Mayer SW, Tyson JJ, Pollack KM, Curriero FC.

Am J Orthop (Belle Mead NJ). 2016 Mar-Apr;45(3):168-75.

PMID:
26991571
15.

JigCell Run Manager (JC-RM): a tool for managing large sets of biochemical model parametrizations.

Palmisano A, Hoops S, Watson LT, Jones TC Jr, Tyson JJ, Shaffer CA.

BMC Syst Biol. 2015 Dec 24;9:95. doi: 10.1186/s12918-015-0237-0.

16.

From START to FINISH: computational analysis of cell cycle control in budding yeast.

Kraikivski P, Chen KC, Laomettachit T, Murali TM, Tyson JJ.

NPJ Syst Biol Appl. 2015 Dec 10;1:15016. doi: 10.1038/npjsba.2015.16. eCollection 2015.

17.

The Physarum polycephalum Genome Reveals Extensive Use of Prokaryotic Two-Component and Metazoan-Type Tyrosine Kinase Signaling.

Schaap P, Barrantes I, Minx P, Sasaki N, Anderson RW, Bénard M, Biggar KK, Buchler NE, Bundschuh R, Chen X, Fronick C, Fulton L, Golderer G, Jahn N, Knoop V, Landweber LF, Maric C, Miller D, Noegel AA, Peace R, Pierron G, Sasaki T, Schallenberg-Rüdinger M, Schleicher M, Singh R, Spaller T, Storey KB, Suzuki T, Tomlinson C, Tyson JJ, Warren WC, Werner ER, Werner-Felmayer G, Wilson RK, Winckler T, Gott JM, Glöckner G, Marwan W.

Genome Biol Evol. 2015 Nov 27;8(1):109-25. doi: 10.1093/gbe/evv237.

18.

Endocrine resistance in breast cancer--An overview and update.

Clarke R, Tyson JJ, Dixon JM.

Mol Cell Endocrinol. 2015 Dec 15;418 Pt 3:220-34. doi: 10.1016/j.mce.2015.09.035. Epub 2015 Oct 9. Review.

19.

Experimental testing of a new integrated model of the budding yeast Start transition.

Adames NR, Schuck PL, Chen KC, Murali TM, Tyson JJ, Peccoud J.

Mol Biol Cell. 2015 Nov 5;26(22):3966-84. doi: 10.1091/mbc.E15-06-0358. Epub 2015 Aug 26.

20.

Dynamic Modeling of the Interaction Between Autophagy and Apoptosis in Mammalian Cells.

Tavassoly I, Parmar J, Shajahan-Haq AN, Clarke R, Baumann WT, Tyson JJ.

CPT Pharmacometrics Syst Pharmacol. 2015 Apr;4(4):263-72. doi: 10.1002/psp4.29. Epub 2015 Apr 17.

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