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T Cell Lymphoma and Leukemia in Severe Combined Immunodeficiency Pigs following Bone Marrow Transplantation: A Case Report.

Powell EJ, Graham J, Ellinwood NM, Hostetter J, Yaeger M, Ho CS, Gault L, Norlin V, Snella EN, Jens J, Waide EH, Boettcher AN, Kerrigan M, Rowland RRR, Ross JW, Dekkers JCM, Tuggle CK.

Front Immunol. 2017 Jul 12;8:813. doi: 10.3389/fimmu.2017.00813. eCollection 2017.


A high-quality annotated transcriptome of swine peripheral blood.

Liu H, Smith TPL, Nonneman DJ, Dekkers JCM, Tuggle CK.

BMC Genomics. 2017 Jun 24;18(1):479. doi: 10.1186/s12864-017-3863-7.


Genetic architecture of gene expression underlying variation in host response to porcine reproductive and respiratory syndrome virus infection.

Kommadath A, Bao H, Choi I, Reecy JM, Koltes JE, Fritz-Waters E, Eisley CJ, Grant JR, Rowland RR, Tuggle CK, Dekkers JC, Lunney JK, Guan LL, Stothard P, Plastow GS.

Sci Rep. 2017 Apr 10;7:46203. doi: 10.1038/srep46203.


Genomewide association of piglet responses to infection with one of two porcine reproductive and respiratory syndrome virus isolates.

Waide EH, Tuggle CK, Serão NV, Schroyen M, Hess A, Rowland RR, Lunney JK, Plastow G, Dekkers JC.

J Anim Sci. 2017 Jan;95(1):16-38. doi: 10.2527/jas.2016.0874.


Pigs with Severe Combined Immunodeficiency Are Impaired in Controlling Influenza A Virus Infection.

Rajao DS, Loving CL, Waide EH, Gauger PC, Dekkers JC, Tuggle CK, Vincent AL.

J Innate Immun. 2017;9(2):193-202. doi: 10.1159/000451007. Epub 2016 Dec 17.


GO-FAANG meeting: a Gathering On Functional Annotation of Animal Genomes.

Tuggle CK, Giuffra E, White SN, Clarke L, Zhou H, Ross PJ, Acloque H, Reecy JM, Archibald A, Bellone RR, Boichard M, Chamberlain A, Cheng H, Crooijmans RP, Delany ME, Finno CJ, Groenen MA, Hayes B, Lunney JK, Petersen JL, Plastow GS, Schmidt CJ, Song J, Watson M.

Anim Genet. 2016 Oct;47(5):528-33. doi: 10.1111/age.12466. Epub 2016 Jul 24.


NK cells are intrinsically functional in pigs with Severe Combined Immunodeficiency (SCID) caused by spontaneous mutations in the Artemis gene.

Powell EJ, Cunnick JE, Knetter SM, Loving CL, Waide EH, Dekkers JC, Tuggle CK.

Vet Immunol Immunopathol. 2016 Jul;175:1-6. doi: 10.1016/j.vetimm.2016.04.008. Epub 2016 Apr 19.


Identification of potential serum biomarkers to predict feed efficiency in young pigs.

Grubbs JK, Dekkers JC, Huff-Lonergan E, Tuggle CK, Lonergan SM.

J Anim Sci. 2016 Apr;94(4):1482-92. doi: 10.2527/jas.2015-9692.


Bioinformatic analyses in early host response to Porcine Reproductive and Respiratory Syndrome virus (PRRSV) reveals pathway differences between pigs with alternate genotypes for a major host response QTL.

Schroyen M, Eisley C, Koltes JE, Fritz-Waters E, Choi I, Plastow GS, Guan L, Stothard P, Bao H, Kommadath A, Reecy JM, Lunney JK, Rowland RR, Dekkers JC, Tuggle CK.

BMC Genomics. 2016 Mar 8;17:196. doi: 10.1186/s12864-016-2547-z.


Post-weaning blood transcriptomic differences between Yorkshire pigs divergently selected for residual feed intake.

Liu H, Nguyen YT, Nettleton D, Dekkers JC, Tuggle CK.

BMC Genomics. 2016 Jan 22;17:73. doi: 10.1186/s12864-016-2395-x.


Detecting Differentially Expressed Genes with RNA-seq Data Using Backward Selection to Account for the Effects of Relevant Covariates.

Nguyen Y, Nettleton D, Liu H, Tuggle CK.

J Agric Biol Environ Stat. 2015;20(4):577-597. Epub 2015 Oct 1.


Not All SCID Pigs Are Created Equally: Two Independent Mutations in the Artemis Gene Cause SCID in Pigs.

Waide EH, Dekkers JC, Ross JW, Rowland RR, Wyatt CR, Ewen CL, Evans AB, Thekkoot DM, Boddicker NJ, Serão NV, Ellinwood NM, Tuggle CK.

J Immunol. 2015 Oct 1;195(7):3171-9. doi: 10.4049/jimmunol.1501132. Epub 2015 Aug 28.


Genome-wide whole blood microRNAome and transcriptome analyses reveal miRNA-mRNA regulated host response to foodborne pathogen Salmonella infection in swine.

Bao H, Kommadath A, Liang G, Sun X, Arantes AS, Tuggle CK, Bearson SM, Plastow GS, Stothard P, Guan le L.

Sci Rep. 2015 Jul 31;5:12620. doi: 10.1038/srep12620.


Whole blood microarray analysis of pigs showing extreme phenotypes after a porcine reproductive and respiratory syndrome virus infection.

Schroyen M, Steibel JP, Koltes JE, Choi I, Raney NE, Eisley C, Fritz-Waters E, Reecy JM, Dekkers JC, Rowland RR, Lunney JK, Ernst CW, Tuggle CK.

BMC Genomics. 2015 Jul 10;16:516. doi: 10.1186/s12864-015-1741-8.


Assessing peripheral blood cell profile of Yorkshire pigs divergently selected for residual feed intake.

Mpetile Z, Young JM, Gabler NK, Dekkers JC, Tuggle CK.

J Anim Sci. 2015 Mar;93(3):892-9. doi: 10.2527/jas.2014-8132.


Transcript profiles in longissimus dorsi muscle and subcutaneous adipose tissue: a comparison of pigs with different postweaning growth rates.

Pilcher CM, Jones CK, Schroyen M, Severin AJ, Patience JF, Tuggle CK, Koltes JE.

J Anim Sci. 2015 May;93(5):2134-43. doi: 10.2527/jas.2014-8593.


Investigation of the efficacy of albumin removal procedures on porcine serum proteome profile.

Grubbs JK, Tuggle CK, Dekkers JC, Boddicker NJ, Nguyen YT, Huff-Lonergan E, Nettleton D, Lonergan SM.

J Anim Sci. 2015 Apr;93(4):1592-8. doi: 10.2527/jas.2014-8559.


Identification of a putative quantitative trait nucleotide in guanylate binding protein 5 for host response to PRRS virus infection.

Koltes JE, Fritz-Waters E, Eisley CJ, Choi I, Bao H, Kommadath A, Serão NV, Boddicker NJ, Abrams SM, Schroyen M, Loyd H, Tuggle CK, Plastow GS, Guan L, Stothard P, Lunney JK, Liu P, Carpenter S, Rowland RR, Dekkers JC, Reecy JM.

BMC Genomics. 2015 May 28;16:412. doi: 10.1186/s12864-015-1635-9.


Livestock models in translational medicine.

Roth JA, Tuggle CK.

ILAR J. 2015;56(1):1-6. doi: 10.1093/ilar/ilv011.


Coordinated international action to accelerate genome-to-phenome with FAANG, the Functional Annotation of Animal Genomes project.

Andersson L, Archibald AL, Bottema CD, Brauning R, Burgess SC, Burt DW, Casas E, Cheng HH, Clarke L, Couldrey C, Dalrymple BP, Elsik CG, Foissac S, Giuffra E, Groenen MA, Hayes BJ, Huang LS, Khatib H, Kijas JW, Kim H, Lunney JK, McCarthy FM, McEwan JC, Moore S, Nanduri B, Notredame C, Palti Y, Plastow GS, Reecy JM, Rohrer GA, Sarropoulou E, Schmidt CJ, Silverstein J, Tellam RL, Tixier-Boichard M, Tosser-Klopp G, Tuggle CK, Vilkki J, White SN, Zhao S, Zhou H; FAANG Consortium.

Genome Biol. 2015 Mar 25;16:57. doi: 10.1186/s13059-015-0622-4.

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