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Items: 1 to 20 of 58


MicroRNA-30a Regulation of Epithelial-Mesenchymal Transition in Diabetic Cataracts Through Targeting SNAI1.

Zhang L, Wang Y, Li W, Tsonis PA, Li Z, Xie L, Huang Y.

Sci Rep. 2017 Apr 25;7(1):1117. doi: 10.1038/s41598-017-01320-3.


A developmentally regulated switch from stem cells to dedifferentiation for limb muscle regeneration in newts.

Tanaka HV, Ng NC, Yang Yu Z, Casco-Robles MM, Maruo F, Tsonis PA, Chiba C.

Nat Commun. 2016 Mar 30;7:11069. doi: 10.1038/ncomms11069.


Initial characterization of the large genome of the salamander Ambystoma mexicanum using shotgun and laser capture chromosome sequencing.

Keinath MC, Timoshevskiy VA, Timoshevskaya NY, Tsonis PA, Voss SR, Smith JJ.

Sci Rep. 2015 Nov 10;5:16413. doi: 10.1038/srep16413.


A robust transcriptional program in newts undergoing multiple events of lens regeneration throughout their lifespan.

Sousounis K, Qi F, Yadav MC, Millán JL, Toyama F, Chiba C, Eguchi Y, Eguchi G, Tsonis PA.

Elife. 2015 Nov 2;4. pii: e09594. doi: 10.7554/eLife.09594.


mirPRo-a novel standalone program for differential expression and variation analysis of miRNAs.

Shi J, Dong M, Li L, Liu L, Luz-Madrigal A, Tsonis PA, Del Rio-Tsonis K, Liang C.

Sci Rep. 2015 Oct 5;5:14617. doi: 10.1038/srep14617.


CADBURE: A generic tool to evaluate the performance of spliced aligners on RNA-Seq data.

Kumar PK, Hoang TV, Robinson ML, Tsonis PA, Liang C.

Sci Rep. 2015 Aug 25;5:13443. doi: 10.1038/srep13443.


Comparative sequence- and structure-inspired drug design for PilF protein of Neisseria meningitidis.

Mehta AS, Snigdha K, Potukuchi MS, Tsonis PA.

Hum Genomics. 2015 Apr 19;9:5. doi: 10.1186/s40246-015-0027-1.


Molecular signatures that correlate with induction of lens regeneration in newts: lessons from proteomic analysis.

Sousounis K, Bhavsar R, Looso M, Krüger M, Beebe J, Braun T, Tsonis PA.

Hum Genomics. 2014 Dec 11;8:22. doi: 10.1186/s40246-014-0022-y.


Comparative transcriptome analysis of epithelial and fiber cells in newborn mouse lenses with RNA sequencing.

Hoang TV, Kumar PK, Sutharzan S, Tsonis PA, Liang C, Robinson ML.

Mol Vis. 2014 Nov 4;20:1491-517. eCollection 2014.


Exogenous Oct-4 inhibits lens transdifferentiation in the newt Notophthalmus viridescens.

Bhavsar RB, Tsonis PA.

PLoS One. 2014 Jul 14;9(7):e102510. doi: 10.1371/journal.pone.0102510. eCollection 2014.


Plasticity for axolotl lens regeneration is associated with age-related changes in gene expression.

Sousounis K, Athippozhy AT, Voss SR, Tsonis PA.

Regeneration (Oxf). 2014 Oct 12;1(3):47-57. doi: 10.1002/reg2.25. eCollection 2014 Jun.


Reprogramming of the chick retinal pigmented epithelium after retinal injury.

Luz-Madrigal A, Grajales-Esquivel E, McCorkle A, DiLorenzo AM, Barbosa-Sabanero K, Tsonis PA, Del Rio-Tsonis K.

BMC Biol. 2014 Apr 17;12:28. doi: 10.1186/1741-7007-12-28.


Forced swim test induces divergent global transcriptomic alterations in the hippocampus of high versus low novelty-seeker rats.

Pitychoutis PM, Sanoudou D, Papandreou M, Nasias D, Kouskou M, Tomlinson CR, Tsonis PA, Papadopoulou-Daifoti Z.

Hum Genomics. 2014 Feb 25;8:4. doi: 10.1186/1479-7364-8-4.


Transcriptome analysis of Nautilus and pygmy squid developing eye provides insights in lens and eye evolution.

Sousounis K, Ogura A, Tsonis PA.

PLoS One. 2013 Oct 16;8(10):e78054. doi: 10.1371/journal.pone.0078054. eCollection 2013.


Complement anaphylatoxin C3a is a potent inducer of embryonic chick retina regeneration.

Haynes T, Luz-Madrigal A, Reis ES, Echeverri Ruiz NP, Grajales-Esquivel E, Tzekou A, Tsonis PA, Lambris JD, Del Rio-Tsonis K.

Nat Commun. 2013;4:2312. doi: 10.1038/ncomms3312.


Intrinsic lens forming potential of mouse lens epithelial versus newt iris pigment epithelial cells in three-dimensional culture.

Hoffmann A, Nakamura K, Tsonis PA.

Tissue Eng Part C Methods. 2014 Feb;20(2):91-103. doi: 10.1089/ten.TEC.2013.0078. Epub 2013 Jul 10.


Transcriptome analysis of newt lens regeneration reveals distinct gradients in gene expression patterns.

Sousounis K, Looso M, Maki N, Ivester CJ, Braun T, Tsonis PA.

PLoS One. 2013 Apr 16;8(4):e61445. doi: 10.1371/journal.pone.0061445. Print 2013.


Salamander Hox clusters contain repetitive DNA and expanded non-coding regions: a typical Hox structure for non-mammalian tetrapod vertebrates?

Voss SR, Putta S, Walker JA, Smith JJ, Maki N, Tsonis PA.

Hum Genomics. 2013 Apr 5;7:9. doi: 10.1186/1479-7364-7-9.


Loss of the six3/6 controlling pathways might have resulted in pinhole-eye evolution in Nautilus.

Ogura A, Yoshida MA, Moritaki T, Okuda Y, Sese J, Shimizu KK, Sousounis K, Tsonis PA.

Sci Rep. 2013;3:1432. doi: 10.1038/srep01432.


A de novo assembly of the newt transcriptome combined with proteomic validation identifies new protein families expressed during tissue regeneration.

Looso M, Preussner J, Sousounis K, Bruckskotten M, Michel CS, Lignelli E, Reinhardt R, Höffner S, Krüger M, Tsonis PA, Borchardt T, Braun T.

Genome Biol. 2013 Feb 20;14(2):R16. doi: 10.1186/gb-2013-14-2-r16.

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