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Items: 1 to 20 of 21

1.

Selection Shapes Transcriptional Logic and Regulatory Specialization in Genetic Networks.

Fogelmark K, Peterson C, Troein C.

PLoS One. 2016 Feb 29;11(2):e0150340. doi: 10.1371/journal.pone.0150340. eCollection 2016.

2.

Rethinking transcriptional activation in the Arabidopsis circadian clock.

Fogelmark K, Troein C.

PLoS Comput Biol. 2014 Jul 17;10(7):e1003705. doi: 10.1371/journal.pcbi.1003705. eCollection 2014 Jul.

3.

Light and circadian regulation of clock components aids flexible responses to environmental signals.

Dixon LE, Hodge SK, van Ooijen G, Troein C, Akman OE, Millar AJ.

New Phytol. 2014 Jul;203(2):568-77. doi: 10.1111/nph.12853. Epub 2014 May 20.

4.

Carbon availability triggers the decomposition of plant litter and assimilation of nitrogen by an ectomycorrhizal fungus.

Rineau F, Shah F, Smits MM, Persson P, Johansson T, Carleer R, Troein C, Tunlid A.

ISME J. 2013 Oct;7(10):2010-22. doi: 10.1038/ismej.2013.91. Epub 2013 Jun 20.

5.

SBSI: an extensible distributed software infrastructure for parameter estimation in systems biology.

Adams R, Clark A, Yamaguchi A, Hanlon N, Tsorman N, Ali S, Lebedeva G, Goltsov A, Sorokin A, Akman OE, Troein C, Millar AJ, Goryanin I, Gilmore S.

Bioinformatics. 2013 Mar 1;29(5):664-5. doi: 10.1093/bioinformatics/btt023. Epub 2013 Jan 17.

6.

Mutation-induced fold switching among lattice proteins.

Holzgräfe C, Irbäck A, Troein C.

J Chem Phys. 2011 Nov 21;135(19):195101. doi: 10.1063/1.3660691.

PMID:
22112098
7.

On evaluating models in Computational Morphodynamics.

Jönsson H, Gruel J, Krupinski P, Troein C.

Curr Opin Plant Biol. 2012 Feb;15(1):103-10. doi: 10.1016/j.pbi.2011.09.007. Epub 2011 Oct 13.

PMID:
22000039
8.

Proteasome function is required for biological timing throughout the twenty-four hour cycle.

van Ooijen G, Dixon LE, Troein C, Millar AJ.

Curr Biol. 2011 May 24;21(10):869-75. doi: 10.1016/j.cub.2011.03.060. Epub 2011 Apr 28.

9.

Circadian rhythms persist without transcription in a eukaryote.

O'Neill JS, van Ooijen G, Dixon LE, Troein C, Corellou F, Bouget FY, Reddy AB, Millar AJ.

Nature. 2011 Jan 27;469(7331):554-8. doi: 10.1038/nature09654.

10.

Multiple light inputs to a simple clock circuit allow complex biological rhythms.

Troein C, Corellou F, Dixon LE, van Ooijen G, O'Neill JS, Bouget FY, Millar AJ.

Plant J. 2011 Apr;66(2):375-85. doi: 10.1111/j.1365-313X.2011.04489.x.

11.

Weather and seasons together demand complex biological clocks.

Troein C, Locke JC, Turner MS, Millar AJ.

Curr Biol. 2009 Dec 1;19(22):1961-4. doi: 10.1016/j.cub.2009.09.024. Epub 2009 Oct 8.

12.

Is transcriptional regulation of metabolic pathways an optimal strategy for fitness?

Troein C, Ahrén D, Krogh M, Peterson C.

PLoS One. 2007 Sep 5;2(9):e855.

13.

Transcriptional dynamics of the embryonic stem cell switch.

Chickarmane V, Troein C, Nuber UA, Sauro HM, Peterson C.

PLoS Comput Biol. 2006 Sep 15;2(9):e123. Epub 2006 Jul 31.

14.

An introduction to BioArray Software Environment.

Troein C, Vallon-Christersson J, Saal LH.

Methods Enzymol. 2006;411:99-119. Review.

PMID:
16939788
15.

Random maps and attractors in random Boolean networks.

Samuelsson B, Troein C.

Phys Rev E Stat Nonlin Soft Matter Phys. 2005 Oct;72(4 Pt 2):046112. Epub 2005 Oct 13.

PMID:
16383473
16.

Signal transduction pathway profiling of individual tumor samples.

Breslin T, Krogh M, Peterson C, Troein C.

BMC Bioinformatics. 2005 Jun 29;6:163.

17.

Genetic networks with canalyzing Boolean rules are always stable.

Kauffman S, Peterson C, Samuelsson B, Troein C.

Proc Natl Acad Sci U S A. 2004 Dec 7;101(49):17102-7. Epub 2004 Nov 30.

18.

Random Boolean network models and the yeast transcriptional network.

Kauffman S, Peterson C, Samuelsson B, Troein C.

Proc Natl Acad Sci U S A. 2003 Dec 9;100(25):14796-9. Epub 2003 Dec 1.

19.

Superpolynomial growth in the number of attractors in Kauffman networks.

Samuelsson B, Troein C.

Phys Rev Lett. 2003 Mar 7;90(9):098701. Epub 2003 Mar 4.

PMID:
12689263
20.

BioArray Software Environment (BASE): a platform for comprehensive management and analysis of microarray data.

Saal LH, Troein C, Vallon-Christersson J, Gruvberger S, Borg A, Peterson C.

Genome Biol. 2002 Jul 15;3(8):SOFTWARE0003. Epub 2002 Jul 15.

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