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Items: 1 to 20 of 117

1.

Mutation profiles in early-stage lung squamous cell carcinoma with clinical follow-up and correlation with markers of immune function.

Choi M, Kadara H, Zhang J, Parra ER, Rodriguez-Canales J, Gaffney SG, Zhao Z, Behrens C, Fujimoto J, Chow C, Kim K, Kalhor N, Moran C, Rimm D, Swisher S, Gibbons DL, Heymach J, Kaftan E, Townsend JP, Lynch TJ, Schlessinger J, Lee J, Lifton RP, Herbst RS, Wistuba II.

Ann Oncol. 2017 Jan 1;28(1):83-89. doi: 10.1093/annonc/mdw437. No abstract available.

PMID:
28177435
2.

One Health approach to cost-effective rabies control in India.

Fitzpatrick MC, Shah HA, Pandey A, Bilinski AM, Kakkar M, Clark AD, Townsend JP, Abbas SS, Galvani AP.

Proc Natl Acad Sci U S A. 2016 Dec 20;113(51):14574-14581. doi: 10.1073/pnas.1604975113.

3.

PhyInformR: phylogenetic experimental design and phylogenomic data exploration in R.

Dornburg A, Fisk JN, Tamagnan J, Townsend JP.

BMC Evol Biol. 2016 Dec 1;16(1):262.

4.

PhyloOncology: Understanding cancer through phylogenetic analysis.

Somarelli JA, Ware KE, Kostadinov R, Robinson JM, Amri H, Abu-Asab M, Fourie N, Diogo R, Swofford D, Townsend JP.

Biochim Biophys Acta. 2016 Oct 31. pii: S0304-419X(16)30083-X. doi: 10.1016/j.bbcan.2016.10.006. [Epub ahead of print]

PMID:
27810337
5.

Vaccination strategies against respiratory syncytial virus.

Yamin D, Jones FK, DeVincenzo JP, Gertler S, Kobiler O, Townsend JP, Galvani AP.

Proc Natl Acad Sci U S A. 2016 Nov 15;113(46):13239-13244.

PMID:
27799521
6.

Climatic and evolutionary drivers of phase shifts in the plague epidemics of colonial India.

Lewnard JA, Townsend JP.

Proc Natl Acad Sci U S A. 2016 Dec 20;113(51):14601-14608. doi: 10.1073/pnas.1604985113.

7.

Whole-exome sequencing and immune profiling of early-stage lung adenocarcinoma with fully annotated clinical follow-up.

Kadara H, Choi M, Zhang J, Parra ER, Rodriguez-Canales J, Gaffney SG, Zhao Z, Behrens C, Fujimoto J, Chow C, Yoo Y, Kalhor N, Moran C, Rimm D, Swisher S, Gibbons DL, Heymach J, Kaftan E, Townsend JP, Lynch TJ, Schlessinger J, Lee J, Lifton RP, Wistuba II, Herbst RS.

Ann Oncol. 2016 Sep 29. pii: mdw436. doi: 10.1093/annonc/mdw436. [Epub ahead of print]

PMID:
27687306
8.

Mutation profiles in early-stage lung squamous cell carcinoma with clinical follow-up and correlation with markers of immune function.

Choi M, Kadara H, Zhang J, Cuentas EP, Canales JR, Gaffney SG, Zhao Z, Behrens C, Fujimoto J, Chow C, Kim K, Kalhor N, Moran C, Rimm D, Swisher S, Gibbons DL, Heymach J, Kaftan E, Townsend JP, Lynch TJ, Schlessinger J, Lee JJ, Lifton RP, Herbst RS, Wistuba II.

Ann Oncol. 2016 Sep 29. pii: mdw437. [Epub ahead of print]

PMID:
27687303
9.

PathScore: a web tool for identifying altered pathways in cancer data.

Gaffney SG, Townsend JP.

Bioinformatics. 2016 Dec 1;32(23):3688-3690.

PMID:
27503224
10.

Cost-Effectiveness of Pertussis Vaccination During Pregnancy in the United States.

Atkins KE, Fitzpatrick MC, Galvani AP, Townsend JP.

Am J Epidemiol. 2016 Jun 15;183(12):1159-70. doi: 10.1093/aje/kwv347.

PMID:
27188951
11.

Cost-effectiveness of next-generation vaccines: The case of pertussis.

Fitzpatrick MC, Wenzel NS, Scarpino SV, Althouse BM, Atkins KE, Galvani AP, Townsend JP.

Vaccine. 2016 Jun 17;34(29):3405-11. doi: 10.1016/j.vaccine.2016.04.010.

PMID:
27087151
12.

Quantifying Transmission of Clostridium difficile within and outside Healthcare Settings.

Durham DP, Olsen MA, Dubberke ER, Galvani AP, Townsend JP.

Emerg Infect Dis. 2016 Apr;22(4):608-16. doi: 10.3201/eid2204.150455.

13.

The Fast-Evolving phy-2 Gene Modulates Sexual Development in Response to Light in the Model Fungus Neurospora crassa.

Wang Z, Li N, Li J, Dunlap JC, Trail F, Townsend JP.

MBio. 2016 Mar 8;7(2):e02148. doi: 10.1128/mBio.02148-15.

14.

Determinants of Human African Trypanosomiasis Elimination via Paratransgenesis.

Gilbert JA, Medlock J, Townsend JP, Aksoy S, Ndeffo Mbah M, Galvani AP.

PLoS Negl Trop Dis. 2016 Mar 8;10(3):e0004465. doi: 10.1371/journal.pntd.0004465.

15.

Crystal Structure of a Complex of Surfactant Protein D (SP-D) and Haemophilus influenzae Lipopolysaccharide Reveals Shielding of Core Structures in SP-D-Resistant Strains.

Clark HW, Mackay RM, Deadman ME, Hood DW, Madsen J, Moxon ER, Townsend JP, Reid KB, Ahmed A, Shaw AJ, Greenhough TJ, Shrive AK.

Infect Immun. 2016 Apr 22;84(5):1585-92. doi: 10.1128/IAI.01239-15.

16.

Early and multiple origins of metastatic lineages within primary tumors.

Zhao ZM, Zhao B, Bai Y, Iamarino A, Gaffney SG, Schlessinger J, Lifton RP, Rimm DL, Townsend JP.

Proc Natl Acad Sci U S A. 2016 Feb 23;113(8):2140-5. doi: 10.1073/pnas.1525677113.

17.

Genomic and Gene-Expression Comparisons among Phage-Resistant Type-IV Pilus Mutants of Pseudomonas syringae pathovar phaseolicola.

Sistrom M, Park D, O'Brien HE, Wang Z, Guttman DS, Townsend JP, Turner PE.

PLoS One. 2015 Dec 15;10(12):e0144514. doi: 10.1371/journal.pone.0144514.

18.

Optimizing age of cytomegalovirus screening and vaccination to avert congenital disease in the US.

Alfaro-Murillo JA, Townsend JP, Galvani AP.

Vaccine. 2016 Jan 4;34(2):225-9. doi: 10.1016/j.vaccine.2015.11.039.

PMID:
26631416
19.

The Impact of Enhanced Screening and Treatment on Hepatitis C in the United States.

Durham DP, Skrip LA, Bruce RD, Vilarinho S, Elbasha EH, Galvani AP, Townsend JP.

Clin Infect Dis. 2016 Feb 1;62(3):298-304. doi: 10.1093/cid/civ894.

20.

Impact of bed capacity on spatiotemporal shifts in Ebola transmission.

Townsend JP, Skrip LA, Galvani AP.

Proc Natl Acad Sci U S A. 2015 Nov 17;112(46):14125-6. doi: 10.1073/pnas.1518484112. No abstract available.

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