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Items: 1 to 20 of 42

1.

Genome Sequence of Rhodoferax antarcticus ANT.BRT; A Psychrophilic Purple Nonsulfur Bacterium from an Antarctic Microbial Mat.

Baker JM, Riester CJ, Skinner BM, Newell AW, Swingley WD, Madigan MT, Jung DO, Asao M, Chen M, Loughlin PC, Pan H, Lin Y, Li Y, Shaw J, Prado M, Sherman C, Tang JK, Blankenship RE, Zhao T, Touchman JW, Sattley WM.

Microorganisms. 2017 Feb 21;5(1). pii: E8. doi: 10.3390/microorganisms5010008.

2.

Metabolic flexibility revealed in the genome of the cyst-forming alpha-1 proteobacterium Rhodospirillum centenum.

Lu YK, Marden J, Han M, Swingley WD, Mastrian SD, Chowdhury SR, Hao J, Helmy T, Kim S, Kurdoglu AA, Matthies HJ, Rollo D, Stothard P, Blankenship RE, Bauer CE, Touchman JW.

BMC Genomics. 2010 May 25;11:325. doi: 10.1186/1471-2164-11-325.

3.

Evidence for multiple recent host species shifts among the Ranaviruses (family Iridoviridae).

Jancovich JK, Bremont M, Touchman JW, Jacobs BL.

J Virol. 2010 Mar;84(6):2636-47. doi: 10.1128/JVI.01991-09. Epub 2009 Dec 30.

4.

Full sequence and comparative analysis of the plasmid pAPEC-1 of avian pathogenic E. coli chi7122 (O78:K80:H9).

Mellata M, Touchman JW, Curtiss R.

PLoS One. 2009;4(1):e4232. doi: 10.1371/journal.pone.0004232. Epub 2009 Jan 21.

5.

The genome of Heliobacterium modesticaldum, a phototrophic representative of the Firmicutes containing the simplest photosynthetic apparatus.

Sattley WM, Madigan MT, Swingley WD, Cheung PC, Clocksin KM, Conrad AL, Dejesa LC, Honchak BM, Jung DO, Karbach LE, Kurdoglu A, Lahiri S, Mastrian SD, Page LE, Taylor HL, Wang ZT, Raymond J, Chen M, Blankenship RE, Touchman JW.

J Bacteriol. 2008 Jul;190(13):4687-96. doi: 10.1128/JB.00299-08. Epub 2008 Apr 25.

6.

Niche adaptation and genome expansion in the chlorophyll d-producing cyanobacterium Acaryochloris marina.

Swingley WD, Chen M, Cheung PC, Conrad AL, Dejesa LC, Hao J, Honchak BM, Karbach LE, Kurdoglu A, Lahiri S, Mastrian SD, Miyashita H, Page L, Ramakrishna P, Satoh S, Sattley WM, Shimada Y, Taylor HL, Tomo T, Tsuchiya T, Wang ZT, Raymond J, Mimuro M, Blankenship RE, Touchman JW.

Proc Natl Acad Sci U S A. 2008 Feb 12;105(6):2005-10. doi: 10.1073/pnas.0709772105. Epub 2008 Feb 5.

7.

Modelling gene functional linkages using yeast microarray data.

Wang T, Xue G, Touchman JW.

Int J Bioinform Res Appl. 2007;3(2):170-86.

PMID:
18048187
8.

Cancer. The gene topography of cancer.

Trent JM, Touchman JW.

Science. 2007 Nov 16;318(5853):1079-80. No abstract available.

PMID:
18006731
9.

A North American Yersinia pestis draft genome sequence: SNPs and phylogenetic analysis.

Touchman JW, Wagner DM, Hao J, Mastrian SD, Shah MK, Vogler AJ, Allender CJ, Clark EA, Benitez DS, Youngkin DJ, Girard JM, Auerbach RK, Beckstrom-Sternberg SM, Keim P.

PLoS One. 2007 Feb 21;2(2):e220.

10.

The complete genome sequence of Roseobacter denitrificans reveals a mixotrophic rather than photosynthetic metabolism.

Swingley WD, Sadekar S, Mastrian SD, Matthies HJ, Hao J, Ramos H, Acharya CR, Conrad AL, Taylor HL, Dejesa LC, Shah MK, O'huallachain ME, Lince MT, Blankenship RE, Beatty JT, Touchman JW.

J Bacteriol. 2007 Feb;189(3):683-90. Epub 2006 Nov 10.

11.

Contrasting histories of G6PD molecular evolution and malarial resistance in humans and chimpanzees.

Verrelli BC, Tishkoff SA, Stone AC, Touchman JW.

Mol Biol Evol. 2006 Aug;23(8):1592-601. Epub 2006 Jun 2.

PMID:
16751255
12.

Proximal and distal sequences control UV cone pigment gene expression in transgenic zebrafish.

Luo W, Williams J, Smallwood PM, Touchman JW, Roman LM, Nathans J.

J Biol Chem. 2004 Apr 30;279(18):19286-93. Epub 2004 Feb 13.

13.

Functional analysis of intra-allelic variation at NACP-Rep1 in the alpha-synuclein gene.

Chiba-Falek O, Touchman JW, Nussbaum RL.

Hum Genet. 2003 Oct;113(5):426-31. Epub 2003 Aug 16.

PMID:
12923682
14.

Comparative analyses of multi-species sequences from targeted genomic regions.

Thomas JW, Touchman JW, Blakesley RW, Bouffard GG, Beckstrom-Sternberg SM, Margulies EH, Blanchette M, Siepel AC, Thomas PJ, McDowell JC, Maskeri B, Hansen NF, Schwartz MS, Weber RJ, Kent WJ, Karolchik D, Bruen TC, Bevan R, Cutler DJ, Schwartz S, Elnitski L, Idol JR, Prasad AB, Lee-Lin SQ, Maduro VV, Summers TJ, Portnoy ME, Dietrich NL, Akhter N, Ayele K, Benjamin B, Cariaga K, Brinkley CP, Brooks SY, Granite S, Guan X, Gupta J, Haghighi P, Ho SL, Huang MC, Karlins E, Laric PL, Legaspi R, Lim MJ, Maduro QL, Masiello CA, Mastrian SD, McCloskey JC, Pearson R, Stantripop S, Tiongson EE, Tran JT, Tsurgeon C, Vogt JL, Walker MA, Wetherby KD, Wiggins LS, Young AC, Zhang LH, Osoegawa K, Zhu B, Zhao B, Shu CL, De Jong PJ, Lawrence CE, Smit AF, Chakravarti A, Haussler D, Green P, Miller W, Green ED.

Nature. 2003 Aug 14;424(6950):788-93.

PMID:
12917688
15.

Pericentromeric duplications in the laboratory mouse.

Thomas JW, Schueler MG, Summers TJ, Blakesley RW, McDowell JC, Thomas PJ, Idol JR, Maduro VV, Lee-Lin SQ, Touchman JW, Bouffard GG, Beckstrom-Sternberg SM; NISC Comparative Sequencing Program, Green ED.

Genome Res. 2003 Jan;13(1):55-63.

16.

Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.

Strausberg RL, Feingold EA, Grouse LH, Derge JG, Klausner RD, Collins FS, Wagner L, Shenmen CM, Schuler GD, Altschul SF, Zeeberg B, Buetow KH, Schaefer CF, Bhat NK, Hopkins RF, Jordan H, Moore T, Max SI, Wang J, Hsieh F, Diatchenko L, Marusina K, Farmer AA, Rubin GM, Hong L, Stapleton M, Soares MB, Bonaldo MF, Casavant TL, Scheetz TE, Brownstein MJ, Usdin TB, Toshiyuki S, Carninci P, Prange C, Raha SS, Loquellano NA, Peters GJ, Abramson RD, Mullahy SJ, Bosak SA, McEwan PJ, McKernan KJ, Malek JA, Gunaratne PH, Richards S, Worley KC, Hale S, Garcia AM, Gay LJ, Hulyk SW, Villalon DK, Muzny DM, Sodergren EJ, Lu X, Gibbs RA, Fahey J, Helton E, Ketteman M, Madan A, Rodrigues S, Sanchez A, Whiting M, Madan A, Young AC, Shevchenko Y, Bouffard GG, Blakesley RW, Touchman JW, Green ED, Dickson MC, Rodriguez AC, Grimwood J, Schmutz J, Myers RM, Butterfield YS, Krzywinski MI, Skalska U, Smailus DE, Schnerch A, Schein JE, Jones SJ, Marra MA; Mammalian Gene Collection Program Team.

Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.

17.

Grouping and identification of sequence tags (GRIST): bioinformatics tools for the NEIBank database.

Wistow G, Bernstein SL, Touchman JW, Bouffard G, Wyatt MK, Peterson K, Behal A, Gao J, Buchoff P, Smith D.

Mol Vis. 2002 Jun 15;8:164-70.

18.

Expressed sequence tag analysis of adult human lens for the NEIBank Project: over 2000 non-redundant transcripts, novel genes and splice variants.

Wistow G, Bernstein SL, Wyatt MK, Behal A, Touchman JW, Bouffard G, Smith D, Peterson K.

Mol Vis. 2002 Jun 15;8:171-84.

19.

Expressed sequence tag analysis of adult human iris for the NEIBank Project: steroid-response factors and similarities with retinal pigment epithelium.

Wistow G, Bernstein SL, Ray S, Wyatt MK, Behal A, Touchman JW, Bouffard G, Smith D, Peterson K.

Mol Vis. 2002 Jun 15;8:185-95.

20.

Expressed sequence tag analysis of human retina for the NEIBank Project: retbindin, an abundant, novel retinal cDNA and alternative splicing of other retina-preferred gene transcripts.

Wistow G, Bernstein SL, Wyatt MK, Ray S, Behal A, Touchman JW, Bouffard G, Smith D, Peterson K.

Mol Vis. 2002 Jun 15;8:196-204.

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