Sort by

Send to

Choose Destination

Search results

Items: 1 to 20 of 128


Dynamic landscape of pancreatic carcinogenesis reveals early molecular networks of malignancy.

Kong B, Bruns P, Behler NA, Chang L, Schlitter AM, Cao J, Gewies A, Ruland J, Fritzsche S, Valkovskaya N, Jian Z, Regel I, Raulefs S, Irmler M, Beckers J, Friess H, Erkan M, Mueller NS, Roth S, Hackert T, Esposito I, Theis FJ, Kleeff J, Michalski CW.

Gut. 2016 Sep 19. pii: gutjnl-2015-310913. doi: 10.1136/gutjnl-2015-310913. [Epub ahead of print]


TALEN/CRISPR-mediated engineering of a promoterless anti-viral RNAi hairpin into an endogenous miRNA locus.

Senís E, Mockenhaupt S, Rupp D, Bauer T, Paramasivam N, Knapp B, Gronych J, Grosse S, Windisch MP, Schmidt F, Theis FJ, Eils R, Lichter P, Schlesner M, Bartenschlager R, Grimm D.

Nucleic Acids Res. 2016 Sep 9. pii: gkw805. [Epub ahead of print]


Diffusion pseudotime robustly reconstructs lineage branching.

Haghverdi L, Büttner M, Wolf FA, Buettner F, Theis FJ.

Nat Methods. 2016 Oct;13(10):845-8. doi: 10.1038/nmeth.3971. Epub 2016 Aug 29.


Tailored parameter optimization methods for ordinary differential equation models with steady-state constraints.

Fiedler A, Raeth S, Theis FJ, Hausser A, Hasenauer J.

BMC Syst Biol. 2016 Aug 22;10(1):80. doi: 10.1186/s12918-016-0319-7.


Inference for Stochastic Chemical Kinetics Using Moment Equations and System Size Expansion.

Fröhlich F, Thomas P, Kazeroonian A, Theis FJ, Grima R, Hasenauer J.

PLoS Comput Biol. 2016 Jul 22;12(7):e1005030. doi: 10.1371/journal.pcbi.1005030. eCollection 2016 Jul.


Early myeloid lineage choice is not initiated by random PU.1 to GATA1 protein ratios.

Hoppe PS, Schwarzfischer M, Loeffler D, Kokkaliaris KD, Hilsenbeck O, Moritz N, Endele M, Filipczyk A, Gambardella A, Ahmed N, Etzrodt M, Coutu DL, Rieger MA, Marr C, Strasser MK, Schauberger B, Burtscher I, Ermakova O, Bürger A, Lickert H, Nerlov C, Theis FJ, Schroeder T.

Nature. 2016 Jul 13;535(7611):299-302. doi: 10.1038/nature18320.


Software tools for single-cell tracking and quantification of cellular and molecular properties.

Hilsenbeck O, Schwarzfischer M, Skylaki S, Schauberger B, Hoppe PS, Loeffler D, Kokkaliaris KD, Hastreiter S, Skylaki E, Filipczyk A, Strasser M, Buggenthin F, Feigelman JS, Krumsiek J, van den Berg AJ, Endele M, Etzrodt M, Marr C, Theis FJ, Schroeder T.

Nat Biotechnol. 2016 Jul 12;34(7):703-6. doi: 10.1038/nbt.3626. No abstract available.


A computational model to predict severity of atopic eczema from 30 serum proteins.

Krause L, Mourantchanian V, Brockow K, Theis FJ, Schmidt-Weber CB, Knapp B, Mueller NS, Eyerich S.

J Allergy Clin Immunol. 2016 Oct;138(4):1207-1210.e2. doi: 10.1016/j.jaci.2016.04.018. No abstract available.


A novel molecular disease classifier for psoriasis and eczema.

Garzorz-Stark N, Krause L, Lauffer F, Atenhan A, Thomas J, Stark SP, Franz R, Weidinger S, Balato A, Mueller NS, Theis FJ, Ring J, Schmidt-Weber CB, Biedermann T, Eyerich S, Eyerich K.

Exp Dermatol. 2016 Oct;25(10):767-74. doi: 10.1111/exd.13077.


Editorial overview: Systems biology-the intersection of experiments and computation, underpinning biotechnology.

Styczynski MP, Theis FJ.

Curr Opin Biotechnol. 2016 Jun;39:iv-vi. doi: 10.1016/j.copbio.2016.04.025. Epub 2016 May 9. No abstract available.


MEMO: multi-experiment mixture model analysis of censored data.

Geissen EM, Hasenauer J, Heinrich S, Hauf S, Theis FJ, Radde NE.

Bioinformatics. 2016 Aug 15;32(16):2464-72. doi: 10.1093/bioinformatics/btw190. Epub 2016 Apr 19.


Combinatorial Histone Acetylation Patterns Are Generated by Motif-Specific Reactions.

Blasi T, Feller C, Feigelman J, Hasenauer J, Imhof A, Theis FJ, Becker PB, Marr C.

Cell Syst. 2016 Jan 27;2(1):49-58. doi: 10.1016/j.cels.2016.01.002. Epub 2016 Jan 27.


Computational approaches for systems metabolomics.

Krumsiek J, Bartel J, Theis FJ.

Curr Opin Biotechnol. 2016 Jun;39:198-206. doi: 10.1016/j.copbio.2016.04.009. Epub 2016 Apr 30. Review.


miTALOS v2: Analyzing Tissue Specific microRNA Function.

Preusse M, Theis FJ, Mueller NS.

PLoS One. 2016 Mar 21;11(3):e0151771. doi: 10.1371/journal.pone.0151771. eCollection 2016.


Unbiased Prediction and Feature Selection in High-Dimensional Survival Regression.

Laimighofer M, Krumsiek J, Buettner F, Theis FJ.

J Comput Biol. 2016 Apr;23(4):279-90. doi: 10.1089/cmb.2015.0192. Epub 2016 Feb 19.


MicroRNA-138 promotes acquired alkylator resistance in glioblastoma by targeting the Bcl-2-interacting mediator BIM.

Stojcheva N, Schechtmann G, Sass S, Roth P, Florea AM, Stefanski A, Stühler K, Wolter M, Müller NS, Theis FJ, Weller M, Reifenberger G, Happold C.

Oncotarget. 2016 Mar 15;7(11):12937-50. doi: 10.18632/oncotarget.7346.


CERENA: ChEmical REaction Network Analyzer--A Toolbox for the Simulation and Analysis of Stochastic Chemical Kinetics.

Kazeroonian A, Fröhlich F, Raue A, Theis FJ, Hasenauer J.

PLoS One. 2016 Jan 25;11(1):e0146732. doi: 10.1371/journal.pone.0146732. eCollection 2016.


Label-free cell cycle analysis for high-throughput imaging flow cytometry.

Blasi T, Hennig H, Summers HD, Theis FJ, Cerveira J, Patterson JO, Davies D, Filby A, Carpenter AE, Rees P.

Nat Commun. 2016 Jan 7;7:10256. doi: 10.1038/ncomms10256.


MicroRNA-Target Network Inference and Local Network Enrichment Analysis Identify Two microRNA Clusters with Distinct Functions in Head and Neck Squamous Cell Carcinoma.

Sass S, Pitea A, Unger K, Hess J, Mueller NS, Theis FJ.

Int J Mol Sci. 2015 Dec 18;16(12):30204-22. doi: 10.3390/ijms161226230.


destiny: diffusion maps for large-scale single-cell data in R.

Angerer P, Haghverdi L, Büttner M, Theis FJ, Marr C, Buettner F.

Bioinformatics. 2016 Apr 15;32(8):1241-3. doi: 10.1093/bioinformatics/btv715. Epub 2015 Dec 14.

Items per page

Supplemental Content

Loading ...
Support Center