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Items: 1 to 20 of 21

1.

Pan-genome Analysis of Ancient and Modern Salmonella enterica Demonstrates Genomic Stability of the Invasive Para C Lineage for Millennia.

Zhou Z, Lundstrøm I, Tran-Dien A, Duchêne S, Alikhan NF, Sergeant MJ, Langridge G, Fotakis AK, Nair S, Stenøien HK, Hamre SS, Casjens S, Christophersen A, Quince C, Thomson NR, Weill FX, Ho SYW, Gilbert MTP, Achtman M.

Curr Biol. 2018 Aug 6;28(15):2420-2428.e10. doi: 10.1016/j.cub.2018.05.058. Epub 2018 Jul 19.

2.

Microbiological quality and antimicrobial resistance characterization of Salmonella spp. in fresh milk value chains in Ghana.

Parry-Hanson Kunadu A, Holmes M, Miller EL, Grant AJ.

Int J Food Microbiol. 2018 Jul 20;277:41-49. doi: 10.1016/j.ijfoodmicro.2018.04.025. Epub 2018 Apr 14.

PMID:
29680695
3.

Comprehensive Analysis Reveals Two Distinct Evolution Patterns of Salmonella Flagellin Gene Clusters.

Liu Y, Zhang DF, Zhou X, Xu L, Zhang L, Shi X.

Front Microbiol. 2017 Dec 22;8:2604. doi: 10.3389/fmicb.2017.02604. eCollection 2017.

4.

Pan-genome Analyses of the Species Salmonella enterica, and Identification of Genomic Markers Predictive for Species, Subspecies, and Serovar.

Laing CR, Whiteside MD, Gannon VPJ.

Front Microbiol. 2017 Jul 31;8:1345. doi: 10.3389/fmicb.2017.01345. eCollection 2017.

5.

Construction of a Pan-Genome Allele Database of Salmonella enterica Serovar Enteritidis for Molecular Subtyping and Disease Cluster Identification.

Liu YY, Chen CC, Chiou CS.

Front Microbiol. 2016 Dec 15;7:2010. doi: 10.3389/fmicb.2016.02010. eCollection 2016.

6.

PanGeT: Pan-genomics tool.

Yuvaraj I, Sridhar J, Michael D, Sekar K.

Gene. 2017 Feb 5;600:77-84. doi: 10.1016/j.gene.2016.11.025. Epub 2016 Nov 13.

PMID:
27851981
7.

PGAdb-builder: A web service tool for creating pan-genome allele database for molecular fine typing.

Liu YY, Chiou CS, Chen CC.

Sci Rep. 2016 Nov 8;6:36213. doi: 10.1038/srep36213.

8.

Antibiotic Resistance, Core-Genome and Protein Expression in IncHI1 Plasmids in Salmonella Typhimurium.

Kubasova T, Cejkova D, Matiasovicova J, Sekelova Z, Polansky O, Medvecky M, Rychlik I, Juricova H.

Genome Biol Evol. 2016 Jun 13;8(6):1661-71. doi: 10.1093/gbe/evw105.

9.

PanCoreGen - Profiling, detecting, annotating protein-coding genes in microbial genomes.

Paul S, Bhardwaj A, Bag SK, Sokurenko EV, Chattopadhyay S.

Genomics. 2015 Dec;106(6):367-72. doi: 10.1016/j.ygeno.2015.10.001. Epub 2015 Oct 9.

10.

Roary: rapid large-scale prokaryote pan genome analysis.

Page AJ, Cummins CA, Hunt M, Wong VK, Reuter S, Holden MT, Fookes M, Falush D, Keane JA, Parkhill J.

Bioinformatics. 2015 Nov 15;31(22):3691-3. doi: 10.1093/bioinformatics/btv421. Epub 2015 Jul 20.

11.

Genome dynamics and evolution of Salmonella Typhi strains from the typhoid-endemic zones.

Baddam R, Kumar N, Shaik S, Lankapalli AK, Ahmed N.

Sci Rep. 2014 Dec 12;4:7457. doi: 10.1038/srep07457.

12.

High resolution assembly and characterization of genomes of Canadian isolates of Salmonella Enteritidis.

Ogunremi D, Devenish J, Amoako K, Kelly H, Dupras AA, Belanger S, Wang LR.

BMC Genomics. 2014 Aug 25;15:713. doi: 10.1186/1471-2164-15-713.

13.

Comparative genomic analysis between typhoidal and non-typhoidal Salmonella serovars reveals typhoid-specific protein families.

Zou QH, Li RQ, Liu GR, Liu SL.

Infect Genet Evol. 2014 Aug;26:295-302. doi: 10.1016/j.meegid.2014.06.008. Epub 2014 Jun 18.

PMID:
24951835
14.

Evaluation of whole genome sequencing for outbreak detection of Salmonella enterica.

Leekitcharoenphon P, Nielsen EM, Kaas RS, Lund O, Aarestrup FM.

PLoS One. 2014 Feb 4;9(2):e87991. doi: 10.1371/journal.pone.0087991. eCollection 2014.

15.

Neutral genomic microevolution of a recently emerged pathogen, Salmonella enterica serovar Agona.

Zhou Z, McCann A, Litrup E, Murphy R, Cormican M, Fanning S, Brown D, Guttman DS, Brisse S, Achtman M.

PLoS Genet. 2013 Apr;9(4):e1003471. doi: 10.1371/journal.pgen.1003471. Epub 2013 Apr 18.

16.

Evolution of pan-genomes of Escherichia coli, Shigella spp., and Salmonella enterica.

Gordienko EN, Kazanov MD, Gelfand MS.

J Bacteriol. 2013 Jun;195(12):2786-92. doi: 10.1128/JB.02285-12. Epub 2013 Apr 12.

17.

The Pathogen-annotated Tracking Resource Network (PATRN) system: a web-based resource to aid food safety, regulatory science, and investigations of foodborne pathogens and disease.

Gopinath G, Hari K, Jain R, Mammel MK, Kothary MH, Franco AA, Grim CJ, Jarvis KG, Sathyamoorthy V, Hu L, Datta AR, Patel IR, Jackson SA, Gangiredla J, Kotewicz ML, LeClerc JE, Wekell M, McCardell BA, Solomotis MD, Tall BD.

Food Microbiol. 2013 Jun;34(2):303-18. doi: 10.1016/j.fm.2013.01.001. Epub 2013 Jan 23.

PMID:
23541197
18.

Pan-genomic analysis provides insights into the genomic variation and evolution of Salmonella Paratyphi A.

Liang W, Zhao Y, Chen C, Cui X, Yu J, Xiao J, Kan B.

PLoS One. 2012;7(9):e45346. doi: 10.1371/journal.pone.0045346. Epub 2012 Sep 19.

19.

Genomic variation in Salmonella enterica core genes for epidemiological typing.

Leekitcharoenphon P, Lukjancenko O, Friis C, Aarestrup FM, Ussery DW.

BMC Genomics. 2012 Mar 12;13:88. doi: 10.1186/1471-2164-13-88.

20.

Identification of Salmonella enterica species- and subgroup-specific genomic regions using Panseq 2.0.

Laing C, Villegas A, Taboada EN, Kropinski A, Thomas JE, Gannon VP.

Infect Genet Evol. 2011 Dec;11(8):2151-61. doi: 10.1016/j.meegid.2011.09.021. Epub 2011 Oct 1.

PMID:
22001825

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