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Items: 19

1.

Influence of Mass Resolving Power in Orbital Ion-Trap Mass Spectrometry-Based Metabolomics.

Najdekr L, Friedecký D, Tautenhahn R, Pluskal T, Wang J, Huang Y, Adam T.

Anal Chem. 2016 Dec 6;88(23):11429-11435. Epub 2016 Nov 23.

PMID:
27809493
2.

Determining conserved metabolic biomarkers from a million database queries.

Kurczy ME, Ivanisevic J, Johnson CH, Uritboonthai W, Hoang L, Fang M, Hicks M, Aldebot A, Rinehart D, Mellander LJ, Tautenhahn R, Patti GJ, Spilker ME, Benton HP, Siuzdak G.

Bioinformatics. 2015 Dec 1;31(23):3721-4. doi: 10.1093/bioinformatics/btv475. Epub 2015 Aug 13.

3.

Arteriovenous Blood Metabolomics: A Readout of Intra-Tissue Metabostasis.

Ivanisevic J, Elias D, Deguchi H, Averell PM, Kurczy M, Johnson CH, Tautenhahn R, Zhu Z, Watrous J, Jain M, Griffin J, Patti GJ, Siuzdak G.

Sci Rep. 2015 Aug 5;5:12757. doi: 10.1038/srep12757.

4.

Meta-analysis of global metabolomic data identifies metabolites associated with life-span extension.

Patti GJ, Tautenhahn R, Johannsen D, Kalisiak E, Ravussin E, Brüning JC, Dillin A, Siuzdak G.

Metabolomics. 2014 Aug 1;10(4):737-743.

5.

Autonomous metabolomics for rapid metabolite identification in global profiling.

Benton HP, Ivanisevic J, Mahieu NG, Kurczy ME, Johnson CH, Franco L, Rinehart D, Valentine E, Gowda H, Ubhi BK, Tautenhahn R, Gieschen A, Fields MW, Patti GJ, Siuzdak G.

Anal Chem. 2015 Jan 20;87(2):884-91. doi: 10.1021/ac5025649. Epub 2014 Dec 26.

6.

Massifquant: open-source Kalman filter-based XC-MS isotope trace feature detection.

Conley CJ, Smith R, Torgrip RJ, Taylor RM, Tautenhahn R, Prince JT.

Bioinformatics. 2014 Sep 15;30(18):2636-43. doi: 10.1093/bioinformatics/btu359. Epub 2014 May 28.

PMID:
24872423
7.

An untargeted metabolomic workflow to improve structural characterization of metabolites.

Nikolskiy I, Mahieu NG, Chen YJ, Tautenhahn R, Patti GJ.

Anal Chem. 2013 Aug 20;85(16):7713-9. doi: 10.1021/ac400751j. Epub 2013 Aug 2.

8.

Toward 'omic scale metabolite profiling: a dual separation-mass spectrometry approach for coverage of lipid and central carbon metabolism.

Ivanisevic J, Zhu ZJ, Plate L, Tautenhahn R, Chen S, O'Brien PJ, Johnson CH, Marletta MA, Patti GJ, Siuzdak G.

Anal Chem. 2013 Jul 16;85(14):6876-84. doi: 10.1021/ac401140h. Epub 2013 Jul 3.

9.

A view from above: cloud plots to visualize global metabolomic data.

Patti GJ, Tautenhahn R, Rinehart D, Cho K, Shriver LP, Manchester M, Nikolskiy I, Johnson CH, Mahieu NG, Siuzdak G.

Anal Chem. 2013 Jan 15;85(2):798-804. doi: 10.1021/ac3029745. Epub 2012 Dec 26.

10.

An accelerated workflow for untargeted metabolomics using the METLIN database.

Tautenhahn R, Cho K, Uritboonthai W, Zhu Z, Patti GJ, Siuzdak G.

Nat Biotechnol. 2012 Sep;30(9):826-8. doi: 10.1038/nbt.2348. No abstract available.

11.

XCMS Online: a web-based platform to process untargeted metabolomic data.

Tautenhahn R, Patti GJ, Rinehart D, Siuzdak G.

Anal Chem. 2012 Jun 5;84(11):5035-9. doi: 10.1021/ac300698c. Epub 2012 May 10.

12.

Meta-analysis of untargeted metabolomic data from multiple profiling experiments.

Patti GJ, Tautenhahn R, Siuzdak G.

Nat Protoc. 2012 Feb 16;7(3):508-16. doi: 10.1038/nprot.2011.454.

13.

Metabolomics implicates altered sphingolipids in chronic pain of neuropathic origin.

Patti GJ, Yanes O, Shriver LP, Courade JP, Tautenhahn R, Manchester M, Siuzdak G.

Nat Chem Biol. 2012 Jan 22;8(3):232-4. doi: 10.1038/nchembio.767.

14.

CAMERA: an integrated strategy for compound spectra extraction and annotation of liquid chromatography/mass spectrometry data sets.

Kuhl C, Tautenhahn R, Böttcher C, Larson TR, Neumann S.

Anal Chem. 2012 Jan 3;84(1):283-9. doi: 10.1021/ac202450g. Epub 2011 Dec 12.

15.

The metabolome of induced pluripotent stem cells reveals metabolic changes occurring in somatic cell reprogramming.

Panopoulos AD, Yanes O, Ruiz S, Kida YS, Diep D, Tautenhahn R, Herrerías A, Batchelder EM, Plongthongkum N, Lutz M, Berggren WT, Zhang K, Evans RM, Siuzdak G, Izpisua Belmonte JC.

Cell Res. 2012 Jan;22(1):168-77. doi: 10.1038/cr.2011.177. Epub 2011 Nov 8.

16.

Expanding coverage of the metabolome for global metabolite profiling.

Yanes O, Tautenhahn R, Patti GJ, Siuzdak G.

Anal Chem. 2011 Mar 15;83(6):2152-61. doi: 10.1021/ac102981k. Epub 2011 Feb 17.

17.

metaXCMS: second-order analysis of untargeted metabolomics data.

Tautenhahn R, Patti GJ, Kalisiak E, Miyamoto T, Schmidt M, Lo FY, McBee J, Baliga NS, Siuzdak G.

Anal Chem. 2011 Feb 1;83(3):696-700. doi: 10.1021/ac102980g. Epub 2010 Dec 21.

18.

Highly sensitive feature detection for high resolution LC/MS.

Tautenhahn R, Böttcher C, Neumann S.

BMC Bioinformatics. 2008 Nov 28;9:504. doi: 10.1186/1471-2105-9-504.

19.

Critical assessment of alignment procedures for LC-MS proteomics and metabolomics measurements.

Lange E, Tautenhahn R, Neumann S, Gröpl C.

BMC Bioinformatics. 2008 Sep 15;9:375. doi: 10.1186/1471-2105-9-375.

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