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Items: 1 to 20 of 72

1.

Maximum likelihood estimates of pairwise rearrangement distances.

Serdoz S, Egri-Nagy A, Sumner J, Holland BR, Jarvis PD, Tanaka MM, Francis AR.

J Theor Biol. 2017 Apr 20. pii: S0022-5193(17)30179-0. doi: 10.1016/j.jtbi.2017.04.015. [Epub ahead of print]

PMID:
28435014
2.

Genomic heterogeneity of Salmonella enterica serovar Typhimurium bacteriuria from chronic infection.

Octavia S, Wang Q, Tanaka MM, Sintchenko V, Lan R.

Infect Genet Evol. 2017 Mar 7;51:17-20. doi: 10.1016/j.meegid.2017.03.004. [Epub ahead of print]

PMID:
28279807
3.

Evolution of Variable Number Tandem Repeats and Its Relationship with Genomic Diversity in Salmonella Typhimurium.

Fu S, Octavia S, Wang Q, Tanaka MM, Tay CY, Sintchenko V, Lan R.

Front Microbiol. 2016 Dec 26;7:2002. doi: 10.3389/fmicb.2016.02002. eCollection 2016.

4.

Connecting within-host dynamics to the rate of viral molecular evolution.

Peck KM, Chan CH, Tanaka MM.

Virus Evol. 2015 Oct 2;1(1):vev013. eCollection 2015.

5.

Controlled fire use in early humans might have triggered the evolutionary emergence of tuberculosis.

Chisholm RH, Trauer JM, Curnoe D, Tanaka MM.

Proc Natl Acad Sci U S A. 2016 Aug 9;113(32):9051-6. doi: 10.1073/pnas.1603224113. Epub 2016 Jul 25.

6.

Examination of the effects of Campylobacter concisus zonula occludens toxin on intestinal epithelial cells and macrophages.

Mahendran V, Liu F, Riordan SM, Grimm MC, Tanaka MM, Zhang L.

Gut Pathog. 2016 May 18;8:18. doi: 10.1186/s13099-016-0101-9. eCollection 2016.

7.

The emergence of latent infection in the early evolution of Mycobacterium tuberculosis.

Chisholm RH, Tanaka MM.

Proc Biol Sci. 2016 May 25;283(1831). pii: 20160499. doi: 10.1098/rspb.2016.0499.

PMID:
27194699
8.

The genome-wide DNA sequence specificity of the anti-tumour drug bleomycin in human cells.

Murray V, Chen JK, Tanaka MM.

Mol Biol Rep. 2016 Jul;43(7):639-51. doi: 10.1007/s11033-016-3998-7. Epub 2016 May 17.

PMID:
27188426
9.

Modelling the role of immunity in reversion of viral antigenic sites.

Chan CH, Sanders LP, Tanaka MM.

J Theor Biol. 2016 Mar 7;392:23-34. doi: 10.1016/j.jtbi.2015.12.008. Epub 2015 Dec 23.

PMID:
26723535
10.

Dynamics of bacterial insertion sequences: can transposition bursts help the elements persist?

Wu Y, Aandahl RZ, Tanaka MM.

BMC Evol Biol. 2015 Dec 21;15:288. doi: 10.1186/s12862-015-0560-5.

11.

Genomic Variability of Serial Human Isolates of Salmonella enterica Serovar Typhimurium Associated with Prolonged Carriage.

Octavia S, Wang Q, Tanaka MM, Sintchenko V, Lan R.

J Clin Microbiol. 2015 Nov;53(11):3507-14. doi: 10.1128/JCM.01733-15. Epub 2015 Aug 26.

12.

Defining the Core Genome of Salmonella enterica Serovar Typhimurium for Genomic Surveillance and Epidemiological Typing.

Fu S, Octavia S, Tanaka MM, Sintchenko V, Lan R.

J Clin Microbiol. 2015 Aug;53(8):2530-8. doi: 10.1128/JCM.03407-14. Epub 2015 May 27.

13.

Delineating community outbreaks of Salmonella enterica serovar Typhimurium by use of whole-genome sequencing: insights into genomic variability within an outbreak.

Octavia S, Wang Q, Tanaka MM, Kaur S, Sintchenko V, Lan R.

J Clin Microbiol. 2015 Apr;53(4):1063-71. doi: 10.1128/JCM.03235-14. Epub 2015 Jan 21.

14.

Measurement of the inclusive electron neutrino charged current cross section on carbon with the T2K near detector.

Abe K, Adam J, Aihara H, Akiri T, Andreopoulos C, Aoki S, Ariga A, Assylbekov S, Autiero D, Barbi M, Barker GJ, Barr G, Bass M, Batkiewicz M, Bay F, Berardi V, Berger BE, Berkman S, Bhadra S, Blaszczyk Fd, Blondel A, Bojechko C, Bordoni S, Boyd SB, Brailsford D, Bravar A, Bronner C, Buchanan N, Calland RG, Caravaca Rodríguez J, Cartwright SL, Castillo R, Catanesi MG, Cervera A, Cherdack D, Christodoulou G, Clifton A, Coleman J, Coleman SJ, Collazuol G, Connolly K, Cremonesi L, Dabrowska A, Danko I, Das R, Davis S, de Perio P, De Rosa G, Dealtry T, Dennis SR, Densham C, Dewhurst D, Di Lodovico F, Di Luise S, Drapier O, Duboyski T, Duffy K, Dumarchez J, Dytman S, Dziewiecki M, Emery-Schrenk S, Ereditato A, Escudero L, Finch AJ, Friend M, Fujii Y, Fukuda Y, Furmanski AP, Galymov V, Giffin S, Giganti C, Gilje K, Goeldi D, Golan T, Gonin M, Grant N, Gudin D, Hadley DR, Haesler A, Haigh MD, Hamilton P, Hansen D, Hara T, Hartz M, Hasegawa T, Hastings NC, Hayato Y, Hearty C, Helmer RL, Hierholzer M, Hignight J, Hillairet A, Himmel A, Hiraki T, Hirota S, Holeczek J, Horikawa S, Huang K, Ichikawa AK, Ieki K, Ieva M, Ikeda M, Imber J, Insler J, Irvine TJ, Ishida T, Ishii T, Iwai E, Iwamoto K, Iyogi K, Izmaylov A, Jacob A, Jamieson B, Johnson RA, Jo JH, Jonsson P, Jung CK, Kabirnezhad M, Kaboth AC, Kajita T, Kakuno H, Kameda J, Kanazawa Y, Karlen D, Karpikov I, Katori T, Kearns E, Khabibullin M, Khotjantsev A, Kielczewska D, Kikawa T, Kilinski A, Kim J, Kisiel J, Kitching P, Kobayashi T, Koch L, Kolaceke A, Konaka A, Kormos LL, Korzenev A, Koshio Y, Kropp W, Kubo H, Kudenko Y, Kurjata R, Kutter T, Lagoda J, Lamont I, Larkin E, Laveder M, Lawe M, Lazos M, Lindner T, Lister C, Litchfield RP, Longhin A, Ludovici L, Magaletti L, Mahn K, Malek M, Manly S, Marino AD, Marteau J, Martin JF, Martynenko S, Maruyama T, Matveev V, Mavrokoridis K, Mazzucato E, McCarthy M, McCauley N, McFarland KS, McGrew C, Metelko C, Mijakowski P, Miller CA, Minamino A, Mineev O, Missert A, Miura M, Moriyama S, Mueller TA, Murakami A, Murdoch M, Murphy S, Myslik J, Nakadaira T, Nakahata M, Nakamura K, Nakayama S, Nakaya T, Nakayoshi K, Nielsen C, Nirkko M, Nishikawa K, Nishimura Y, O'Keeffe HM, Ohta R, Okumura K, Okusawa T, Oryszczak W, Oser SM, Owen RA, Oyama Y, Palladino V, Palomino JL, Paolone V, Payne D, Perevozchikov O, Perkin JD, Petrov Y, Pickard L, Pinzon Guerra ES, Pistillo C, Plonski P, Poplawska E, Popov B, Posiadala M, Poutissou JM, Poutissou R, Przewlocki P, Quilain B, Radicioni E, Ratoff PN, Ravonel M, Rayner MA, Redij A, Reeves M, Reinherz-Aronis E, Rodrigues PA, Rojas P, Rondio E, Roth S, Rubbia A, Ruterbories D, Sacco R, Sakashita K, Sánchez F, Sato F, Scantamburlo E, Scholberg K, Schoppmann S, Schwehr J, Scott M, Seiya Y, Sekiguchi T, Sekiya H, Sgalaberna D, Shiozawa M, Short S, Shustrov Y, Sinclair P, Smith B, Smy M, Sobczyk JT, Sobel H, Sorel M, Southwell L, Stamoulis P, Steinmann J, Still B, Suda Y, Suzuki A, Suzuki K, Suzuki SY, Suzuki Y, Tacik R, Tada M, Takahashi S, Takeda A, Takeuchi Y, Tanaka HK, Tanaka HA, Tanaka MM, Terhorst D, Terri R, Thompson LF, Thorley A, Tobayama S, Toki W, Tomura T, Totsuka Y, Touramanis C, Tsukamoto T, Tzanov M, Uchida Y, Vacheret A, Vagins M, Vasseur G, Wachala T, Waldron AV, Walter CW, Wark D, Wascko MO, Weber A, Wendell R, Wilkes RJ, Wilking MJ, Wilkinson C, Williamson Z, Wilson JR, Wilson RJ, Wongjirad T, Yamada Y, Yamamoto K, Yanagisawa C, Yano T, Yen S, Yershov N, Yokoyama M, Yuan T, Yu M, Zalewska A, Zalipska J, Zambelli L, Zaremba K, Ziembicki M, Zimmerman ED, Zito M, Żmuda J; T2K Collaboration..

Phys Rev Lett. 2014 Dec 12;113(24):241803. Epub 2014 Dec 11.

PMID:
25541766
15.

Timing of antimicrobial use influences the evolution of antimicrobial resistance during disease epidemics.

Tanaka MM, Althouse BM, Bergstrom CT.

Evol Med Public Health. 2014 Nov 5;2014(1):150-61. doi: 10.1093/emph/eou027.

16.

Viral niche construction alters hosts and ecosystems at multiple scales.

Hamblin SR, White PA, Tanaka MM.

Trends Ecol Evol. 2014 Nov;29(11):594-9. doi: 10.1016/j.tree.2014.08.005. Epub 2014 Sep 16.

PMID:
25237032
17.

Precise measurement of the neutrino mixing parameter θ23 from muon neutrino disappearance in an off-axis beam.

Abe K, Adam J, Aihara H, Akiri T, Andreopoulos C, Aoki S, Ariga A, Ariga T, Assylbekov S, Autiero D, Barbi M, Barker GJ, Barr G, Bass M, Batkiewicz M, Bay F, Bentham SW, Berardi V, Berger BE, Berkman S, Bertram I, Bhadra S, Blaszczyk Fd, Blondel A, Bojechko C, Bordoni S, Boyd SB, Brailsford D, Bravar A, Bronner C, Buchanan N, Calland RG, Caravaca Rodríguez J, Cartwright SL, Castillo R, Catanesi MG, Cervera A, Cherdack D, Christodoulou G, Clifton A, Coleman J, Coleman SJ, Collazuol G, Connolly K, Cremonesi L, Dabrowska A, Danko I, Das R, Davis S, de Perio P, De Rosa G, Dealtry T, Dennis SR, Densham C, Di Lodovico F, Di Luise S, Drapier O, Duboyski T, Duffy K, Dufour F, Dumarchez J, Dytman S, Dziewiecki M, Emery S, Ereditato A, Escudero L, Finch AJ, Floetotto L, Friend M, Fujii Y, Fukuda Y, Furmanski AP, Galymov V, Giffin S, Giganti C, Gilje K, Goeldi D, Golan T, Gonin M, Grant N, Gudin D, Hadley DR, Haesler A, Haigh MD, Hamilton P, Hansen D, Hara T, Hartz M, Hasegawa T, Hastings NC, Hayato Y, Hearty C, Helmer RL, Hierholzer M, Hignight J, Hillairet A, Himmel A, Hiraki T, Hirota S, Holeczek J, Horikawa S, Huang K, Ichikawa AK, Ieki K, Ieva M, Ikeda M, Imber J, Insler J, Irvine TJ, Ishida T, Ishii T, Ives SJ, Iwai E, Iyogi K, Izmaylov A, Jacob A, Jamieson B, Johnson RA, Jo JH, Jonsson P, Jung CK, Kabirnezhad M, Kaboth AC, Kajita T, Kakuno H, Kameda J, Kanazawa Y, Karlen D, Karpikov I, Kearns E, Khabibullin M, Khotjantsev A, Kielczewska D, Kikawa T, Kilinski A, Kim J, Kisiel J, Kitching P, Kobayashi T, Koch L, Kolaceke A, Konaka A, Kormos LL, Korzenev A, Koseki K, Koshio Y, Kreslo I, Kropp W, Kubo H, Kudenko Y, Kumaratunga S, Kurjata R, Kutter T, Lagoda J, Laihem K, Lamont I, Laveder M, Lawe M, Lazos M, Lee KP, Lindner T, Lister C, Litchfield RP, Longhin A, Ludovici L, Macaire M, Magaletti L, Mahn K, Malek M, Manly S, Marino AD, Marteau J, Martin JF, Maruyama T, Marzec J, Mathie EL, Matveev V, Mavrokoridis K, Mazzucato E, McCarthy M, McCauley N, McFarland KS, McGrew C, Metelko C, Mezzetto M, Mijakowski P, Miller CA, Minamino A, Mineev O, Mine S, Missert A, Miura M, Monfregola L, Moriyama S, Mueller TA, Murakami A, Murdoch M, Murphy S, Myslik J, Nagasaki T, Nakadaira T, Nakahata M, Nakai T, Nakamura K, Nakayama S, Nakaya T, Nakayoshi K, Naples D, Nielsen C, Nirkko M, Nishikawa K, Nishimura Y, O'Keeffe HM, Ohta R, Okumura K, Okusawa T, Oryszczak W, Oser SM, Owen RA, Oyama Y, Palladino V, Palomino J, Paolone V, Payne D, Perevozchikov O, Perkin JD, Petrov Y, Pickard L, Pinzon Guerra ES, Pistillo C, Plonski P, Poplawska E, Popov B, Posiadala M, Poutissou JM, Poutissou R, Przewlocki P, Quilain B, Radicioni E, Ratoff PN, Ravonel M, Rayner MA, Redij A, Reeves M, Reinherz-Aronis E, Retiere F, Robert A, Rodrigues PA, Rojas P, Rondio E, Roth S, Rubbia A, Ruterbories D, Sacco R, Sakashita K, Sánchez F, Sato F, Scantamburlo E, Scholberg K, Schoppmann S, Schwehr J, Scott M, Seiya Y, Sekiguchi T, Sekiya H, Sgalaberna D, Shiozawa M, Short S, Shustrov Y, Sinclair P, Smith B, Smith RJ, Smy M, Sobczyk JT, Sobel H, Sorel M, Southwell L, Stamoulis P, Steinmann J, Still B, Suda Y, Suzuki A, Suzuki K, Suzuki SY, Suzuki Y, Szeglowski T, Tacik R, Tada M, Takahashi S, Takeda A, Takeuchi Y, Tanaka HK, Tanaka HA, Tanaka MM, Terhorst D, Terri R, Thompson LF, Thorley A, Tobayama S, Toki W, Tomura T, Totsuka Y, Touramanis C, Tsukamoto T, Tzanov M, Uchida Y, Ueno K, Vacheret A, Vagins M, Vasseur G, Wachala T, Waldron AV, Walter CW, Wark D, Wascko MO, Weber A, Wendell R, Wilkes RJ, Wilking MJ, Wilkinson C, Williamson Z, Wilson JR, Wilson RJ, Wongjirad T, Yamada Y, Yamamoto K, Yanagisawa C, Yen S, Yershov N, Yokoyama M, Yuan T, Yu M, Zalewska A, Zalipska J, Zambelli L, Zaremba K, Ziembicki M, Zimmerman ED, Zito M, Żmuda J; T2K Collaboration..

Phys Rev Lett. 2014 May 9;112(18):181801. Epub 2014 May 8.

PMID:
24856687
18.

Observation of electron neutrino appearance in a muon neutrino beam.

Abe K, Adam J, Aihara H, Akiri T, Andreopoulos C, Aoki S, Ariga A, Ariga T, Assylbekov S, Autiero D, Barbi M, Barker GJ, Barr G, Bass M, Batkiewicz M, Bay F, Bentham SW, Berardi V, Berger BE, Berkman S, Bertram I, Bhadra S, Blaszczyk FD, Blondel A, Bojechko C, Bordoni S, Boyd SB, Brailsford D, Bravar A, Bronner C, Buchanan N, Calland RG, Caravaca Rodríguez J, Cartwright SL, Castillo R, Catanesi MG, Cervera A, Cherdack D, Christodoulou G, Clifton A, Coleman J, Coleman SJ, Collazuol G, Connolly K, Cremonesi L, Dabrowska A, Danko I, Das R, Davis S, de Perio P, De Rosa G, Dealtry T, Dennis SR, Densham C, Di Lodovico F, Di Luise S, Drapier O, Duboyski T, Duffy K, Dufour F, Dumarchez J, Dytman S, Dziewiecki M, Emery S, Ereditato A, Escudero L, Finch AJ, Floetotto L, Friend M, Fujii Y, Fukuda Y, Furmanski AP, Galymov V, Gaudin A, Giffin S, Giganti C, Gilje K, Goeldi D, Golan T, Gomez-Cadenas JJ, Gonin M, Grant N, Gudin D, Hadley DR, Haesler A, Haigh MD, Hamilton P, Hansen D, Hara T, Hartz M, Hasegawa T, Hastings NC, Hayato Y, Hearty C, Helmer RL, Hierholzer M, Hignight J, Hillairet A, Himmel A, Hiraki T, Hirota S, Holeczek J, Horikawa S, Huang K, Ichikawa AK, Ieki K, Ieva M, Ikeda M, Imber J, Insler J, Irvine TJ, Ishida T, Ishii T, Ives SJ, Iyogi K, Izmaylov A, Jacob A, Jamieson B, Johnson RA, Jo JH, Jonsson P, Jung CK, Kaboth AC, Kajita T, Kakuno H, Kameda J, Kanazawa Y, Karlen D, Karpikov I, Kearns E, Khabibullin M, Khotjantsev A, Kielczewska D, Kikawa T, Kilinski A, Kim J, Kisiel J, Kitching P, Kobayashi T, Koch L, Kolaceke A, Konaka A, Kormos LL, Korzenev A, Koseki K, Koshio Y, Kreslo I, Kropp W, Kubo H, Kudenko Y, Kumaratunga S, Kurjata R, Kutter T, Lagoda J, Laihem K, Lamont I, Laveder M, Lawe M, Lazos M, Lee KP, Licciardi C, Lindner T, Lister C, Litchfield RP, Longhin A, Ludovici L, Macaire M, Magaletti L, Mahn K, Malek M, Manly S, Marino AD, Marteau J, Martin JF, Maruyama T, Marzec J, Mathie EL, Matveev V, Mavrokoridis K, Mazzucato E, McCarthy M, McCauley N, McFarland KS, McGrew C, Metelko C, Mezzetto M, Mijakowski P, Miller CA, Minamino A, Mineev O, Mine S, Missert A, Miura M, Monfregola L, Moriyama S, Mueller TA, Murakami A, Murdoch M, Murphy S, Myslik J, Nagasaki T, Nakadaira T, Nakahata M, Nakai T, Nakamura K, Nakayama S, Nakaya T, Nakayoshi K, Naples D, Nielsen C, Nirkko M, Nishikawa K, Nishimura Y, O'Keeffe HM, Ohta R, Okumura K, Okusawa T, Oryszczak W, Oser SM, Owen RA, Oyama Y, Palladino V, Paolone V, Payne D, Pearce GF, Perevozchikov O, Perkin JD, Petrov Y, Pickard LJ, Pinzon Guerra ES, Pistillo C, Plonski P, Poplawska E, Popov B, Posiadala M, Poutissou JM, Poutissou R, Przewlocki P, Quilain B, Radicioni E, Ratoff PN, Ravonel M, Rayner MA, Redij A, Reeves M, Reinherz-Aronis E, Retiere F, Robert A, Rodrigues PA, Rojas P, Rondio E, Roth S, Rubbia A, Ruterbories D, Sacco R, Sakashita K, Sánchez F, Sato F, Scantamburlo E, Scholberg K, Schwehr J, Scott M, Seiya Y, Sekiguchi T, Sekiya H, Sgalaberna D, Shiozawa M, Short S, Shustrov Y, Sinclair P, Smith B, Smith RJ, Smy M, Sobczyk JT, Sobel H, Sorel M, Southwell L, Stamoulis P, Steinmann J, Still B, Suda Y, Suzuki A, Suzuki K, Suzuki SY, Suzuki Y, Szeglowski T, Tacik R, Tada M, Takahashi S, Takeda A, Takeuchi Y, Tanaka HK, Tanaka HA, Tanaka MM, Terhorst D, Terri R, Thompson LF, Thorley A, Tobayama S, Toki W, Tomura T, Totsuka Y, Touramanis C, Tsukamoto T, Tzanov M, Uchida Y, Ueno K, Vacheret A, Vagins M, Vasseur G, Wachala T, Waldron AV, Walter CW, Wark D, Wascko MO, Weber A, Wendell R, Wilkes RJ, Wilking MJ, Wilkinson C, Williamson Z, Wilson JR, Wilson RJ, Wongjirad T, Yamada Y, Yamamoto K, Yanagisawa C, Yen S, Yershov N, Yokoyama M, Yuan T, Zalewska A, Zalipska J, Zambelli L, Zaremba K, Ziembicki M, Zimmerman ED, Zito M, Zmuda J; T2K Collaboration..

Phys Rev Lett. 2014 Feb 14;112(6):061802. Epub 2014 Feb 10.

PMID:
24580687
19.

The emergence and evolution of the novel epidemic norovirus GII.4 variant Sydney 2012.

Eden JS, Hewitt J, Lim KL, Boni MF, Merif J, Greening G, Ratcliff RM, Holmes EC, Tanaka MM, Rawlinson WD, White PA.

Virology. 2014 Feb;450-451:106-13. doi: 10.1016/j.virol.2013.12.005. Epub 2013 Dec 25.

20.

Exact vs. approximate computation: reconciling different estimates of Mycobacterium tuberculosis epidemiological parameters.

Aandahl RZ, Stadler T, Sisson SA, Tanaka MM.

Genetics. 2014 Apr;196(4):1227-30. doi: 10.1534/genetics.113.158808. Epub 2014 Feb 4.

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