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Items: 1 to 20 of 105

1.

Complete mitochondrial genomes of Thai and Lao populations indicate an ancient origin of Austroasiatic groups and demic diffusion in the spread of Tai-Kadai languages.

Kutanan W, Kampuansai J, Srikummool M, Kangwanpong D, Ghirotto S, Brunelli A, Stoneking M.

Hum Genet. 2017 Jan;136(1):85-98. doi: 10.1007/s00439-016-1742-y. Epub 2016 Nov 11. Erratum in: Hum Genet. 2017 Mar 21;:. Hum Genet. 2017 Jun;136(6):803.

2.

Refining the Y chromosome phylogeny with southern African sequences.

Barbieri C, Hübner A, Macholdt E, Ni S, Lippold S, Schröder R, Mpoloka SW, Purps J, Roewer L, Stoneking M, Pakendorf B.

Hum Genet. 2016 May;135(5):541-53. doi: 10.1007/s00439-016-1651-0. Epub 2016 Apr 4.

3.

The Complex Admixture History and Recent Southern Origins of Siberian Populations.

Pugach I, Matveev R, Spitsyn V, Makarov S, Novgorodov I, Osakovsky V, Stoneking M, Pakendorf B.

Mol Biol Evol. 2016 Jul;33(7):1777-95. doi: 10.1093/molbev/msw055. Epub 2016 Mar 18.

4.

Age-Related and Heteroplasmy-Related Variation in Human mtDNA Copy Number.

Wachsmuth M, Hübner A, Li M, Madea B, Stoneking M.

PLoS Genet. 2016 Mar 15;12(3):e1005939. doi: 10.1371/journal.pgen.1005939. eCollection 2016 Mar.

5.

Improvement in detection of minor alleles in next generation sequencing by base quality recalibration.

Ni S, Stoneking M.

BMC Genomics. 2016 Feb 27;17:139. doi: 10.1186/s12864-016-2463-2.

6.

Transmission of human mtDNA heteroplasmy in the Genome of the Netherlands families: support for a variable-size bottleneck.

Li M, Rothwell R, Vermaat M, Wachsmuth M, Schröder R, Laros JF, van Oven M, de Bakker PI, Bovenberg JA, van Duijn CM, van Ommen GJ, Slagboom PE, Swertz MA, Wijmenga C; Genome of Netherlands Consortium, Kayser M, Boomsma DI, Zöllner S, de Knijff P, Stoneking M.

Genome Res. 2016 Apr;26(4):417-26. doi: 10.1101/gr.203216.115. Epub 2016 Feb 25.

7.

Signatures of Evolutionary Adaptation in Quantitative Trait Loci Influencing Trace Element Homeostasis in Liver.

Engelken J, Espadas G, Mancuso FM, Bonet N, Scherr AL, Jímenez-Álvarez V, Codina-Solà M, Medina-Stacey D, Spataro N, Stoneking M, Calafell F, Sabidó E, Bosch E.

Mol Biol Evol. 2016 Mar;33(3):738-54. doi: 10.1093/molbev/msv267. Epub 2015 Nov 17.

8.

A novel candidate region for genetic adaptation to high altitude in Andean populations.

Valverde G, Zhou H, Lippold S, de Filippo C, Tang K, López Herráez D, Li J, Stoneking M.

PLoS One. 2015 May 11;10(5):e0125444. doi: 10.1371/journal.pone.0125444. eCollection 2015.

9.

Evaluating intra- and inter-individual variation in the human placental transcriptome.

Hughes DA, Kircher M, He Z, Guo S, Fairbrother GL, Moreno CS, Khaitovich P, Stoneking M.

Genome Biol. 2015 Mar 19;16:54. doi: 10.1186/s13059-015-0627-z.

10.

Genome-wide insights into the genetic history of human populations.

Pugach I, Stoneking M.

Investig Genet. 2015 Apr 1;6:6. doi: 10.1186/s13323-015-0024-0. eCollection 2015.

11.

Extensive tissue-related and allele-related mtDNA heteroplasmy suggests positive selection for somatic mutations.

Li M, Schröder R, Ni S, Madea B, Stoneking M.

Proc Natl Acad Sci U S A. 2015 Feb 24;112(8):2491-6. doi: 10.1073/pnas.1419651112. Epub 2015 Feb 9.

12.

Comparative analysis of the human saliva microbiome from different climate zones: Alaska, Germany, and Africa.

Li J, Quinque D, Horz HP, Li M, Rzhetskaya M, Raff JA, Hayes MG, Stoneking M.

BMC Microbiol. 2014 Dec 17;14:316. doi: 10.1186/s12866-014-0316-1.

13.

Two ancient human genomes reveal Polynesian ancestry among the indigenous Botocudos of Brazil.

Malaspinas AS, Lao O, Schroeder H, Rasmussen M, Raghavan M, Moltke I, Campos PF, Sagredo FS, Rasmussen S, Gonçalves VF, Albrechtsen A, Allentoft ME, Johnson PL, Li M, Reis S, Bernardo DV, DeGiorgio M, Duggan AT, Bastos M, Wang Y, Stenderup J, Moreno-Mayar JV, Brunak S, Sicheritz-Ponten T, Hodges E, Hannon GJ, Orlando L, Price TD, Jensen JD, Nielsen R, Heinemeier J, Olsen J, Rodrigues-Carvalho C, Lahr MM, Neves WA, Kayser M, Higham T, Stoneking M, Pena SD, Willerslev E.

Curr Biol. 2014 Nov 3;24(21):R1035-7. doi: 10.1016/j.cub.2014.09.078. Epub 2014 Oct 23.

14.

New insights into the history of the C-14010 lactase persistence variant in Eastern and Southern Africa.

Macholdt E, Slatkin M, Pakendorf B, Stoneking M.

Am J Phys Anthropol. 2015 Apr;156(4):661-4. doi: 10.1002/ajpa.22675. Epub 2014 Dec 2. Erratum in: Am J Phys Anthropol. 2015 Sep;158(1):172.

15.

Human paternal and maternal demographic histories: insights from high-resolution Y chromosome and mtDNA sequences.

Lippold S, Xu H, Ko A, Li M, Renaud G, Butthof A, Schröder R, Stoneking M.

Investig Genet. 2014 Sep 24;5:13. doi: 10.1186/2041-2223-5-13. eCollection 2014.

16.

Global analysis of saliva as a source of bacterial genes for insights into human population structure and migration studies.

Henne K, Li J, Stoneking M, Kessler O, Schilling H, Sonanini A, Conrads G, Horz HP.

BMC Evol Biol. 2014 Aug 22;14:190. doi: 10.1186/s12862-014-0190-3.

17.

Reconstructing Austronesian population history in Island Southeast Asia.

Lipson M, Loh PR, Patterson N, Moorjani P, Ko YC, Stoneking M, Berger B, Reich D.

Nat Commun. 2014 Aug 19;5:4689. doi: 10.1038/ncomms5689.

18.

Transmission from centenarians to their offspring of mtDNA heteroplasmy revealed by ultra-deep sequencing.

Giuliani C, Barbieri C, Li M, Bucci L, Monti D, Passarino G, Luiselli D, Franceschi C, Stoneking M, Garagnani P.

Aging (Albany NY). 2014 Jun;6(6):454-67.

19.

Migration and interaction in a contact zone: mtDNA variation among Bantu-speakers in Southern Africa.

Barbieri C, Vicente M, Oliveira S, Bostoen K, Rocha J, Stoneking M, Pakendorf B.

PLoS One. 2014 Jun 5;9(6):e99117. doi: 10.1371/journal.pone.0099117. eCollection 2014.

20.

Maternal history of Oceania from complete mtDNA genomes: contrasting ancient diversity with recent homogenization due to the Austronesian expansion.

Duggan AT, Evans B, Friedlaender FR, Friedlaender JS, Koki G, Merriwether DA, Kayser M, Stoneking M.

Am J Hum Genet. 2014 May 1;94(5):721-33. doi: 10.1016/j.ajhg.2014.03.014. Epub 2014 Apr 10.

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