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Items: 15

1.

COSMIC: somatic cancer genetics at high-resolution.

Forbes SA, Beare D, Boutselakis H, Bamford S, Bindal N, Tate J, Cole CG, Ward S, Dawson E, Ponting L, Stefancsik R, Harsha B, Kok CY, Jia M, Jubb H, Sondka Z, Thompson S, De T, Campbell PJ.

Nucleic Acids Res. 2017 Jan 4;45(D1):D777-D783. doi: 10.1093/nar/gkw1121. Epub 2016 Nov 28.

2.

COSMIC: High-Resolution Cancer Genetics Using the Catalogue of Somatic Mutations in Cancer.

Forbes SA, Beare D, Bindal N, Bamford S, Ward S, Cole CG, Jia M, Kok C, Boutselakis H, De T, Sondka Z, Ponting L, Stefancsik R, Harsha B, Tate J, Dawson E, Thompson S, Jubb H, Campbell PJ.

Curr Protoc Hum Genet. 2016 Oct 11;91:10.11.1-10.11.37. doi: 10.1002/cphg.21.

PMID:
27727438
3.

Overview of the interactive task in BioCreative V.

Wang Q, S Abdul S, Almeida L, Ananiadou S, Balderas-Martínez YI, Batista-Navarro R, Campos D, Chilton L, Chou HJ, Contreras G, Cooper L, Dai HJ, Ferrell B, Fluck J, Gama-Castro S, George N, Gkoutos G, Irin AK, Jensen LJ, Jimenez S, Jue TR, Keseler I, Madan S, Matos S, McQuilton P, Milacic M, Mort M, Natarajan J, Pafilis E, Pereira E, Rao S, Rinaldi F, Rothfels K, Salgado D, Silva RM, Singh O, Stefancsik R, Su CH, Subramani S, Tadepally HD, Tsaprouni L, Vasilevsky N, Wang X, Chatr-Aryamontri A, Laulederkind SJ, Matis-Mitchell S, McEntyre J, Orchard S, Pundir S, Rodriguez-Esteban R, Van Auken K, Lu Z, Schaeffer M, Wu CH, Hirschman L, Arighi CN.

Database (Oxford). 2016 Sep 1;2016. pii: baw119. doi: 10.1093/database/baw119. Print 2016.

4.

tagtog: interactive and text-mining-assisted annotation of gene mentions in PLOS full-text articles.

Cejuela JM, McQuilton P, Ponting L, Marygold SJ, Stefancsik R, Millburn GH, Rost B; FlyBase Consortium..

Database (Oxford). 2014 Apr 7;2014(0):bau033. doi: 10.1093/database/bau033. Print 2014.

5.

CpG distribution and methylation pattern in porcine parvovirus.

Tóth R, Mészáros I, Stefancsik R, Bartha D, Bálint Á, Zádori Z.

PLoS One. 2013 Dec 31;8(12):e85986. doi: 10.1371/journal.pone.0085986. eCollection 2013.

6.

FlyBase 102--advanced approaches to interrogating FlyBase.

St Pierre SE, Ponting L, Stefancsik R, McQuilton P; FlyBase Consortium..

Nucleic Acids Res. 2014 Jan;42(Database issue):D780-8. doi: 10.1093/nar/gkt1092. Epub 2013 Nov 13.

7.

The Drosophila phenotype ontology.

Osumi-Sutherland D, Marygold SJ, Millburn GH, McQuilton PA, Ponting L, Stefancsik R, Falls K, Brown NH, Gkoutos GV.

J Biomed Semantics. 2013 Oct 18;4(1):30. doi: 10.1186/2041-1480-4-30.

8.

R-Smad competition controls activin receptor output in Drosophila.

Peterson AJ, Jensen PA, Shimell M, Stefancsik R, Wijayatonge R, Herder R, Raftery LA, O'Connor MB.

PLoS One. 2012;7(5):e36548. doi: 10.1371/journal.pone.0036548. Epub 2012 May 1.

9.

Toward an interactive article: integrating journals and biological databases.

Rangarajan A, Schedl T, Yook K, Chan J, Haenel S, Otis L, Faelten S, DePellegrin-Connelly T, Isaacson R, Skrzypek MS, Marygold SJ, Stefancsik R, Cherry JM, Sternberg PW, Müller HM.

BMC Bioinformatics. 2011 May 19;12:175. doi: 10.1186/1471-2105-12-175.

10.

The first complete genome sequence of a non-chicken aviadenovirus, proposed to be turkey adenovirus 1.

Kaján GL, Stefancsik R, Ursu K, Palya V, Benko M.

Virus Res. 2010 Nov;153(2):226-33. doi: 10.1016/j.virusres.2010.08.006. Epub 2010 Aug 13.

PMID:
20709116
11.

Structure and sequence of the human fast skeletal troponin T (TNNT3) gene: insight into the evolution of the gene and the origin of the developmentally regulated isoforms.

Stefancsik R, Randall JD, Mao C, Sarkar S.

Comp Funct Genomics. 2003;4(6):609-25. doi: 10.1002/cfg.343. Erratum in: Comp Funct Genomics. 2004;5(2):205.

12.
13.

Stepwise formation of a SMAD activity gradient during dorsal-ventral patterning of the Drosophila embryo.

Sutherland DJ, Li M, Liu XQ, Stefancsik R, Raftery LA.

Development. 2003 Dec;130(23):5705-16. Epub 2003 Oct 8.

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