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Items: 1 to 20 of 45

1.

Genotyping-by-sequencing through transcriptomics: implementation in a range of crop species with varying reproductive habits and ploidy levels.

Malmberg MM, Pembleton LW, Baillie RC, Drayton MC, Sudheesh S, Kaur S, Shinozuka H, Verma P, Spangenberg GC, Daetwyler HD, Forster JW, Cogan NOI.

Plant Biotechnol J. 2017 Sep 15. doi: 10.1111/pbi.12835. [Epub ahead of print]

2.

Reference transcriptome assembly and annotation for perennial ryegrass.

Shinozuka H, Cogan NOI, Spangenberg GC, Forster JW.

Genome. 2017 Dec;60(12):1086-1088. doi: 10.1139/gen-2017-0077. Epub 2017 Aug 25.

PMID:
28841400
3.

Accelerating wheat breeding for end-use quality with multi-trait genomic predictions incorporating near infrared and nuclear magnetic resonance-derived phenotypes.

Hayes BJ, Panozzo J, Walker CK, Choy AL, Kant S, Wong D, Tibbits J, Daetwyler HD, Rochfort S, Hayden MJ, Spangenberg GC.

Theor Appl Genet. 2017 Dec;130(12):2505-2519. doi: 10.1007/s00122-017-2972-7. Epub 2017 Aug 24.

PMID:
28840266
4.

Horizontal transfer of a ß-1,6-glucanase gene from an ancestral species of fungal endophyte to a cool-season grass host.

Shinozuka H, Hettiarachchige IK, Shinozuka M, Cogan NOI, Spangenberg GC, Cocks BG, Forster JW, Sawbridge TI.

Sci Rep. 2017 Aug 22;7(1):9024. doi: 10.1038/s41598-017-07886-2.

5.

Exome sequence genotype imputation in globally diverse hexaploid wheat accessions.

Shi F, Tibbits J, Pasam RK, Kay P, Wong D, Petkowski J, Forrest KL, Hayes BJ, Akhunova A, Davies J, Webb S, Spangenberg GC, Akhunov E, Hayden MJ, Daetwyler HD.

Theor Appl Genet. 2017 Jul;130(7):1393-1404. doi: 10.1007/s00122-017-2895-3. Epub 2017 Apr 4.

PMID:
28378053
6.

Genomic and metabolic characterisation of alkaloid biosynthesis by asexual Epichloë fungal endophytes of tall fescue pasture grasses.

Ekanayake PN, Kaur J, Tian P, Rochfort SJ, Guthridge KM, Sawbridge TI, Spangenberg GC, Forster JW.

Genome. 2017 Jun;60(6):496-509. doi: 10.1139/gen-2016-0173. Epub 2017 Jan 4.

PMID:
28177829
7.

A Review of Perennial Ryegrass Endophytes and Their Potential Use in the Management of African Black Beetle in Perennial Grazing Systems in Australia.

Karpyn Esqueda M, Yen AL, Rochfort S, Guthridge KM, Powell KS, Edwards J, Spangenberg GC.

Front Plant Sci. 2017 Jan 19;8:3. doi: 10.3389/fpls.2017.00003. eCollection 2017. Review.

8.

Genetic Gain and Inbreeding from Genomic Selection in a Simulated Commercial Breeding Program for Perennial Ryegrass.

Lin Z, Cogan NO, Pembleton LW, Spangenberg GC, Forster JW, Hayes BJ, Daetwyler HD.

Plant Genome. 2016 Mar;9(1). doi: 10.3835/plantgenome2015.06.0046.

9.

Targeted genotyping-by-sequencing permits cost-effective identification and discrimination of pasture grass species and cultivars.

Pembleton LW, Drayton MC, Bain M, Baillie RC, Inch C, Spangenberg GC, Wang J, Forster JW, Cogan NO.

Theor Appl Genet. 2016 May;129(5):991-1005. doi: 10.1007/s00122-016-2678-2. Epub 2016 Feb 16.

PMID:
26883039
10.

Design of an F1 hybrid breeding strategy for ryegrasses based on selection of self-incompatibility locus-specific alleles.

Pembleton LW, Shinozuka H, Wang J, Spangenberg GC, Forster JW, Cogan NO.

Front Plant Sci. 2015 Sep 24;6:764. doi: 10.3389/fpls.2015.00764. eCollection 2015.

11.

Selection on Optimal Haploid Value Increases Genetic Gain and Preserves More Genetic Diversity Relative to Genomic Selection.

Daetwyler HD, Hayden MJ, Spangenberg GC, Hayes BJ.

Genetics. 2015 Aug;200(4):1341-8. doi: 10.1534/genetics.115.178038. Epub 2015 Jun 19.

12.

Phylogenomics of asexual Epichloë fungal endophytes forming associations with perennial ryegrass.

Hettiarachchige IK, Ekanayake PN, Mann RC, Guthridge KM, Sawbridge TI, Spangenberg GC, Forster JW.

BMC Evol Biol. 2015 Apr 24;15:72. doi: 10.1186/s12862-015-0349-6.

13.

A simple method for semi-random DNA amplicon fragmentation using the methylation-dependent restriction enzyme MspJI.

Shinozuka H, Cogan NO, Shinozuka M, Marshall A, Kay P, Lin YH, Spangenberg GC, Forster JW.

BMC Biotechnol. 2015 Apr 11;15:25. doi: 10.1186/s12896-015-0139-7.

14.

Gene discovery and molecular marker development, based on high-throughput transcript sequencing of Paspalum dilatatum Poir.

Giordano A, Cogan NO, Kaur S, Drayton M, Mouradov A, Panter S, Schrauf GE, Mason JG, Spangenberg GC.

PLoS One. 2014 Feb 10;9(2):e85050. doi: 10.1371/journal.pone.0085050. eCollection 2014.

15.

Reduced lignin content and altered lignin composition in the warm season forage grass Paspalum dilatatum by down-regulation of a Cinnamoyl CoA reductase gene.

Giordano A, Liu Z, Panter SN, Dimech AM, Shang Y, Wijesinghe H, Fulgueras K, Ran Y, Mouradov A, Rochfort S, Patron NJ, Spangenberg GC.

Transgenic Res. 2014 Jun;23(3):503-17. doi: 10.1007/s11248-014-9784-1. Epub 2014 Feb 7.

16.

Nucleotide diversity of vernalization and flowering-time-related genes in a germplasm collection of meadow fescue (Festuca pratensis Huds. syn. Lolium pratense (Huds.) Darbysh.).

Shinozuka H, Hand ML, Cogan NO, Spangenberg GC, Forster JW.

Ecol Evol. 2013 Nov;3(13):4415-26. doi: 10.1002/ece3.828. Epub 2013 Oct 9.

17.

Phylogenomics of fescue grass-derived fungal endophytes based on selected nuclear genes and the mitochondrial gene complement.

Ekanayake PN, Rabinovich M, Guthridge KM, Spangenberg GC, Forster JW, Sawbridge TI.

BMC Evol Biol. 2013 Dec 12;13:270. doi: 10.1186/1471-2148-13-270.

18.

Plastome Sequence Determination and Comparative Analysis for Members of the Lolium-Festuca Grass Species Complex.

Hand ML, Spangenberg GC, Forster JW, Cogan NO.

G3 (Bethesda). 2013 Apr 9;3(4):607-616. doi: 10.1534/g3.112.005264.

19.

Quantitative Trait Locus (QTL) meta-analysis and comparative genomics for candidate gene prediction in perennial ryegrass (Lolium perenne L.).

Shinozuka H, Cogan NO, Spangenberg GC, Forster JW.

BMC Genet. 2012 Nov 8;13:101. doi: 10.1186/1471-2156-13-101.

20.

Cold acclimation induces rapid and dynamic changes in freeze tolerance mechanisms in the cryophile Deschampsia antarctica E. Desv.

Chew O, Lelean S, John UP, Spangenberg GC.

Plant Cell Environ. 2012 Apr;35(4):829-37. doi: 10.1111/j.1365-3040.2011.02456.x. Epub 2011 Dec 4.

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