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Items: 16

1.

Integrative information theoretic network analysis for genome-wide association study of aspirin exacerbated respiratory disease in Korean population.

Wang S, Jeong HH, Kim D, Wee K, Park HS, Kim SH, Sohn KA.

BMC Med Genomics. 2017 May 24;10(Suppl 1):31. doi: 10.1186/s12920-017-0266-1.

2.

Identification of epigenetic interactions between miRNA and DNA methylation associated with gene expression as potential prognostic markers in bladder cancer.

Shivakumar M, Lee Y, Bang L, Garg T, Sohn KA, Kim D.

BMC Med Genomics. 2017 May 24;10(Suppl 1):30. doi: 10.1186/s12920-017-0269-y.

3.

Identifying subtype-specific associations between gene expression and DNA methylation profiles in breast cancer.

Lee G, Bang L, Kim SY, Kim D, Sohn KA.

BMC Med Genomics. 2017 May 24;10(Suppl 1):28. doi: 10.1186/s12920-017-0268-z.

4.

Integrative regression network for genomic association study.

Vangimalla RR, Jeong HH, Sohn KA.

BMC Med Genomics. 2016 Aug 12;9 Suppl 1:31. doi: 10.1186/s12920-016-0192-7.

5.

Integrative network analysis for survival-associated gene-gene interactions across multiple genomic profiles in ovarian cancer.

Jeong HH, Leem S, Wee K, Sohn KA.

J Ovarian Res. 2015 Jul 3;8:42. doi: 10.1186/s13048-015-0171-1.

6.

Interpretation of personal genome sequencing data in terms of disease ranks based on mutual information.

Na YJ, Sohn KA, Kim JH.

BMC Med Genomics. 2015;8 Suppl 2:S4. doi: 10.1186/1755-8794-8-S2-S4. Epub 2015 May 29.

7.

hiHMM: Bayesian non-parametric joint inference of chromatin state maps.

Sohn KA, Ho JW, Djordjevic D, Jeong HH, Park PJ, Kim JH.

Bioinformatics. 2015 Jul 1;31(13):2066-74. doi: 10.1093/bioinformatics/btv117. Epub 2015 Feb 27.

8.

Investigating the utility of clinical outcome-guided mutual information network in network-based Cox regression.

Jeong HH, Kim S, Wee K, Sohn KA.

BMC Syst Biol. 2015;9 Suppl 1:S8. doi: 10.1186/1752-0509-9-S1-S8. Epub 2015 Jan 21.

9.

Relevance Epistasis Network of Gastritis for Intra-chromosomes in the Korea Associated Resource (KARE) Cohort Study.

Jeong HH, Sohn KA.

Genomics Inform. 2014 Dec;12(4):216-24. doi: 10.5808/GI.2014.12.4.216. Epub 2014 Dec 31.

10.

Comparative analysis of metazoan chromatin organization.

Ho JW, Jung YL, Liu T, Alver BH, Lee S, Ikegami K, Sohn KA, Minoda A, Tolstorukov MY, Appert A, Parker SC, Gu T, Kundaje A, Riddle NC, Bishop E, Egelhofer TA, Hu SS, Alekseyenko AA, Rechtsteiner A, Asker D, Belsky JA, Bowman SK, Chen QB, Chen RA, Day DS, Dong Y, Dose AC, Duan X, Epstein CB, Ercan S, Feingold EA, Ferrari F, Garrigues JM, Gehlenborg N, Good PJ, Haseley P, He D, Herrmann M, Hoffman MM, Jeffers TE, Kharchenko PV, Kolasinska-Zwierz P, Kotwaliwale CV, Kumar N, Langley SA, Larschan EN, Latorre I, Libbrecht MW, Lin X, Park R, Pazin MJ, Pham HN, Plachetka A, Qin B, Schwartz YB, Shoresh N, Stempor P, Vielle A, Wang C, Whittle CM, Xue H, Kingston RE, Kim JH, Bernstein BE, Dernburg AF, Pirrotta V, Kuroda MI, Noble WS, Tullius TD, Kellis M, MacAlpine DM, Strome S, Elgin SC, Liu XS, Lieb JD, Ahringer J, Karpen GH, Park PJ.

Nature. 2014 Aug 28;512(7515):449-52. doi: 10.1038/nature13415.

11.

Knowledge boosting: a graph-based integration approach with multi-omics data and genomic knowledge for cancer clinical outcome prediction.

Kim D, Joung JG, Sohn KA, Shin H, Park YR, Ritchie MD, Kim JH.

J Am Med Inform Assoc. 2015 Jan;22(1):109-20. doi: 10.1136/amiajnl-2013-002481. Epub 2014 Jul 7.

12.

Incorporating inter-relationships between different levels of genomic data into cancer clinical outcome prediction.

Kim D, Shin H, Sohn KA, Verma A, Ritchie MD, Kim JH.

Methods. 2014 Jun 1;67(3):344-53. doi: 10.1016/j.ymeth.2014.02.003. Epub 2014 Feb 18.

13.

Relative impact of multi-layered genomic data on gene expression phenotypes in serous ovarian tumors.

Sohn KA, Kim D, Lim J, Kim JH.

BMC Syst Biol. 2013 Dec 13;7 Suppl 6:S9. doi: 10.1186/1752-0509-7-S6-S9.

14.

MicroRNA-centric measurement improves functional enrichment analysis of co-expressed and differentially expressed microRNA clusters.

Lee SY, Sohn KA, Kim JH.

BMC Genomics. 2012;13 Suppl 7:S17. doi: 10.1186/1471-2164-13-S7-S17. Epub 2012 Dec 13.

15.

Robust estimation of local genetic ancestry in admixed populations using a nonparametric Bayesian approach.

Sohn KA, Ghahramani Z, Xing EP.

Genetics. 2012 Aug;191(4):1295-308. doi: 10.1534/genetics.112.140228. Epub 2012 May 29.

16.

A multivariate regression approach to association analysis of a quantitative trait network.

Kim S, Sohn KA, Xing EP.

Bioinformatics. 2009 Jun 15;25(12):i204-12. doi: 10.1093/bioinformatics/btp218.

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