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Items: 1 to 20 of 38

1.

Cecal microbiota association with tumor load in a colorectal cancer mouse model.

Bråten LS, Sødring M, Paulsen JE, Snipen LG, Rudi K.

Microb Ecol Health Dis. 2017 Jan 1;28(1):1352433. doi: 10.1080/16512235.2017.1352433. eCollection 2017.

2.

microclass: an R-package for 16S taxonomy classification.

Liland KH, Vinje H, Snipen L.

BMC Bioinformatics. 2017 Mar 16;18(1):172. doi: 10.1186/s12859-017-1583-2.

3.

The nucleotide composition of microbial genomes indicates differential patterns of selection on core and accessory genomes.

Bohlin J, Eldholm V, Pettersson JH, Brynildsrud O, Snipen L.

BMC Genomics. 2017 Feb 10;18(1):151. doi: 10.1186/s12864-017-3543-7.

4.

Comparing K-mer based methods for improved classification of 16S sequences.

Vinje H, Liland KH, Almøy T, Snipen L.

BMC Bioinformatics. 2015 Jul 1;16:205. doi: 10.1186/s12859-015-0647-4.

5.

micropan: an R-package for microbial pan-genomics.

Snipen L, Liland KH.

BMC Bioinformatics. 2015 Mar 12;16:79. doi: 10.1186/s12859-015-0517-0.

6.

A genomic virulence reference map of Enterococcus faecalis reveals an important contribution of phage03-like elements in nosocomial genetic lineages to pathogenicity in a Caenorhabditis elegans infection model.

La Rosa SL, Snipen LG, Murray BE, Willems RJ, Gilmore MS, Diep DB, Nes IF, Brede DA.

Infect Immun. 2015 May;83(5):2156-67. doi: 10.1128/IAI.02801-14. Epub 2015 Mar 16.

7.

An evolutionary analysis of genome expansion and pathogenicity in Escherichia coli.

Bohlin J, Brynildsrud OB, Sekse C, Snipen L.

BMC Genomics. 2014 Oct 9;15:882. doi: 10.1186/1471-2164-15-882.

8.

Transcriptomic and functional analysis of NaCl-induced stress in Enterococcus faecalis.

Solheim M, La Rosa SL, Mathisen T, Snipen LG, Nes IF, Brede DA.

PLoS One. 2014 Apr 22;9(4):e94571. doi: 10.1371/journal.pone.0094571. eCollection 2014.

9.

A systematic search for discriminating sites in the 16S ribosomal RNA gene.

Vinje H, Almøy T, Liland KH, Snipen L.

Microb Inform Exp. 2014 Jan 27;4(1):2. doi: 10.1186/2042-5783-4-2.

10.

Improving stability and understandability of genotype-phenotype mapping in Saccharomyces using regularized variable selection in L-PLS regression.

Mehmood T, Warringer J, Snipen L, Sæbø S.

BMC Bioinformatics. 2012 Dec 8;13:327. doi: 10.1186/1471-2105-13-327.

11.

Analysis of evolutionary patterns of genes in Campylobacter jejuni and C. coli.

Snipen L, Wassenaar TM, Altermann E, Olson J, Kathariou S, Lagesen K, Takamiya M, Knøchel S, Ussery DW, Meinersmann RJ.

Microb Inform Exp. 2012 Aug 28;2(1):8. doi: 10.1186/2042-5783-2-8.

12.

Exploration of multivariate analysis in microbial coding sequence modeling.

Mehmood T, Bohlin J, Kristoffersen AB, Sæbø S, Warringer J, Snipen L.

BMC Bioinformatics. 2012 May 14;13:97. doi: 10.1186/1471-2105-13-97.

13.

Relative entropy differences in bacterial chromosomes, plasmids, phages and genomic islands.

Bohlin J, van Passel MW, Snipen L, Kristoffersen AB, Ussery D, Hardy SP.

BMC Genomics. 2012 Feb 10;13:66. doi: 10.1186/1471-2164-13-66.

14.

A domain sequence approach to pangenomics: applications to Escherichia coli.

Snipen LG, Ussery DW.

Version 2. F1000Res. 2012 Oct 1 [revised 2013 Jan 1];1:19. doi: 10.12688/f1000research.1-19.v2. eCollection 2012.

15.

A Partial Least Squares based algorithm for parsimonious variable selection.

Mehmood T, Martens H, Sæbø S, Warringer J, Snipen L.

Algorithms Mol Biol. 2011 Dec 5;6(1):27. doi: 10.1186/1748-7188-6-27.

16.

Growth rate-dependent control in Enterococcus faecalis: effects on the transcriptome and proteome, and strong regulation of lactate dehydrogenase.

Mehmeti I, Faergestad EM, Bekker M, Snipen L, Nes IF, Holo H.

Appl Environ Microbiol. 2012 Jan;78(1):170-6. doi: 10.1128/AEM.06604-11. Epub 2011 Oct 28.

17.

Mining for genotype-phenotype relations in Saccharomyces using partial least squares.

Mehmood T, Martens H, Saebø S, Warringer J, Snipen L.

BMC Bioinformatics. 2011 Aug 3;12:318. doi: 10.1186/1471-2105-12-318.

18.

Global transcriptome response in Lactobacillus sakei during growth on ribose.

McLeod A, Snipen L, Naterstad K, Axelsson L.

BMC Microbiol. 2011 Jun 24;11:145. doi: 10.1186/1471-2180-11-145.

19.

Complete genome sequence of the commensal Enterococcus faecalis 62, isolated from a healthy Norwegian infant.

Brede DA, Snipen LG, Ussery DW, Nederbragt AJ, Nes IF.

J Bacteriol. 2011 May;193(9):2377-8. doi: 10.1128/JB.00183-11. Epub 2011 Mar 11.

20.

Standard operating procedure for computing pangenome trees.

Snipen L, Ussery DW.

Stand Genomic Sci. 2010 Jan 28;2(1):135-41. doi: 10.4056/sigs.38923.

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