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Items: 1 to 20 of 23

1.
2.

Whole-genome patterns of linkage disequilibrium across flycatcher populations clarify the causes and consequences of fine-scale recombination rate variation in birds.

Kawakami T, Mugal CF, Suh A, Nater A, Burri R, Smeds L, Ellegren H.

Mol Ecol. 2017 Aug;26(16):4158-4172. doi: 10.1111/mec.14197. Epub 2017 Jul 5.

PMID:
28597534
3.

Processing of single-photon responses in the mammalian On and Off retinal pathways at the sensitivity limit of vision.

Takeshita D, Smeds L, Ala-Laurila P.

Philos Trans R Soc Lond B Biol Sci. 2017 Apr 5;372(1717). pii: 20160073. doi: 10.1098/rstb.2016.0073.

4.

Direct estimate of the rate of germline mutation in a bird.

Smeds L, Qvarnström A, Ellegren H.

Genome Res. 2016 Sep;26(9):1211-8. doi: 10.1101/gr.204669.116. Epub 2016 Jul 13.

5.

High-Resolution Mapping of Crossover and Non-crossover Recombination Events by Whole-Genome Re-sequencing of an Avian Pedigree.

Smeds L, Mugal CF, Qvarnström A, Ellegren H.

PLoS Genet. 2016 May 24;12(5):e1006044. doi: 10.1371/journal.pgen.1006044. eCollection 2016 May.

6.

PSMC analysis of effective population sizes in molecular ecology and its application to black-and-white Ficedula flycatchers.

Nadachowska-Brzyska K, Burri R, Smeds L, Ellegren H.

Mol Ecol. 2016 Mar;25(5):1058-72. doi: 10.1111/mec.13540. Epub 2016 Feb 15.

7.

Linked selection and recombination rate variation drive the evolution of the genomic landscape of differentiation across the speciation continuum of Ficedula flycatchers.

Burri R, Nater A, Kawakami T, Mugal CF, Olason PI, Smeds L, Suh A, Dutoit L, Bureš S, Garamszegi LZ, Hogner S, Moreno J, Qvarnström A, Ružić M, Sæther SA, Sætre GP, Török J, Ellegren H.

Genome Res. 2015 Nov;25(11):1656-65. doi: 10.1101/gr.196485.115. Epub 2015 Sep 9.

8.

The Dynamics of Incomplete Lineage Sorting across the Ancient Adaptive Radiation of Neoavian Birds.

Suh A, Smeds L, Ellegren H.

PLoS Biol. 2015 Aug 18;13(8):e1002224. doi: 10.1371/journal.pbio.1002224. eCollection 2015 Aug.

9.

Resolving Evolutionary Relationships in Closely Related Species with Whole-Genome Sequencing Data.

Nater A, Burri R, Kawakami T, Smeds L, Ellegren H.

Syst Biol. 2015 Nov;64(6):1000-17. doi: 10.1093/sysbio/syv045. Epub 2015 Jul 17.

10.

Evolutionary analysis of the female-specific avian W chromosome.

Smeds L, Warmuth V, Bolivar P, Uebbing S, Burri R, Suh A, Nater A, Bureš S, Garamszegi LZ, Hogner S, Moreno J, Qvarnström A, Ružić M, Sæther SA, Sætre GP, Török J, Ellegren H.

Nat Commun. 2015 Jun 4;6:7330. doi: 10.1038/ncomms8330.

11.

Temporal Dynamics of Avian Populations during Pleistocene Revealed by Whole-Genome Sequences.

Nadachowska-Brzyska K, Li C, Smeds L, Zhang G, Ellegren H.

Curr Biol. 2015 May 18;25(10):1375-80. doi: 10.1016/j.cub.2015.03.047. Epub 2015 Apr 16.

12.

Genome-wide association mapping in a wild avian population identifies a link between genetic and phenotypic variation in a life-history trait.

Husby A, Kawakami T, Rönnegård L, Smeds L, Ellegren H, Qvarnström A.

Proc Biol Sci. 2015 May 7;282(1806):20150156. doi: 10.1098/rspb.2015.0156.

13.

A transcriptome derived female-specific marker from the invasive Western mosquitofish (Gambusia affinis).

Lamatsch DK, Adolfsson S, Senior AM, Christiansen G, Pichler M, Ozaki Y, Smeds L, Schartl M, Nakagawa S.

PLoS One. 2015 Feb 23;10(2):e0118214. doi: 10.1371/journal.pone.0118214. eCollection 2015.

14.

Whole-genome analyses resolve early branches in the tree of life of modern birds.

Jarvis ED, Mirarab S, Aberer AJ, Li B, Houde P, Li C, Ho SY, Faircloth BC, Nabholz B, Howard JT, Suh A, Weber CC, da Fonseca RR, Li J, Zhang F, Li H, Zhou L, Narula N, Liu L, Ganapathy G, Boussau B, Bayzid MS, Zavidovych V, Subramanian S, Gabaldón T, Capella-Gutiérrez S, Huerta-Cepas J, Rekepalli B, Munch K, Schierup M, Lindow B, Warren WC, Ray D, Green RE, Bruford MW, Zhan X, Dixon A, Li S, Li N, Huang Y, Derryberry EP, Bertelsen MF, Sheldon FH, Brumfield RT, Mello CV, Lovell PV, Wirthlin M, Schneider MP, Prosdocimi F, Samaniego JA, Vargas Velazquez AM, Alfaro-Núñez A, Campos PF, Petersen B, Sicheritz-Ponten T, Pas A, Bailey T, Scofield P, Bunce M, Lambert DM, Zhou Q, Perelman P, Driskell AC, Shapiro B, Xiong Z, Zeng Y, Liu S, Li Z, Liu B, Wu K, Xiao J, Yinqi X, Zheng Q, Zhang Y, Yang H, Wang J, Smeds L, Rheindt FE, Braun M, Fjeldsa J, Orlando L, Barker FK, Jønsson KA, Johnson W, Koepfli KP, O'Brien S, Haussler D, Ryder OA, Rahbek C, Willerslev E, Graves GR, Glenn TC, McCormack J, Burt D, Ellegren H, Alström P, Edwards SV, Stamatakis A, Mindell DP, Cracraft J, Braun EL, Warnow T, Jun W, Gilbert MT, Zhang G.

Science. 2014 Dec 12;346(6215):1320-31. doi: 10.1126/science.1253451.

15.

Genomic identification and characterization of the pseudoautosomal region in highly differentiated avian sex chromosomes.

Smeds L, Kawakami T, Burri R, Bolivar P, Husby A, Qvarnström A, Uebbing S, Ellegren H.

Nat Commun. 2014 Nov 7;5:5448. doi: 10.1038/ncomms6448.

16.

Patterns of sequencing coverage bias revealed by ultra-deep sequencing of vertebrate mitochondria.

Ekblom R, Smeds L, Ellegren H.

BMC Genomics. 2014 Jun 12;15:467. doi: 10.1186/1471-2164-15-467.

17.

A high-density linkage map enables a second-generation collared flycatcher genome assembly and reveals the patterns of avian recombination rate variation and chromosomal evolution.

Kawakami T, Smeds L, Backström N, Husby A, Qvarnström A, Mugal CF, Olason P, Ellegren H.

Mol Ecol. 2014 Aug;23(16):4035-58. doi: 10.1111/mec.12810. Epub 2014 Jun 17.

18.

Nurse staffing and education and hospital mortality in nine European countries: a retrospective observational study.

Aiken LH, Sloane DM, Bruyneel L, Van den Heede K, Griffiths P, Busse R, Diomidous M, Kinnunen J, Kózka M, Lesaffre E, McHugh MD, Moreno-Casbas MT, Rafferty AM, Schwendimann R, Scott PA, Tishelman C, van Achterberg T, Sermeus W; RN4CAST consortium.

Lancet. 2014 May 24;383(9931):1824-30. doi: 10.1016/S0140-6736(13)62631-8. Epub 2014 Feb 26.

19.

Demographic divergence history of pied flycatcher and collared flycatcher inferred from whole-genome re-sequencing data.

Nadachowska-Brzyska K, Burri R, Olason PI, Kawakami T, Smeds L, Ellegren H.

PLoS Genet. 2013 Nov;9(11):e1003942. doi: 10.1371/journal.pgen.1003942. Epub 2013 Nov 7.

20.

Prevalence, patterns and predictors of nursing care left undone in European hospitals: results from the multicountry cross-sectional RN4CAST study.

Ausserhofer D, Zander B, Busse R, Schubert M, De Geest S, Rafferty AM, Ball J, Scott A, Kinnunen J, Heinen M, Sjetne IS, Moreno-Casbas T, Kózka M, Lindqvist R, Diomidous M, Bruyneel L, Sermeus W, Aiken LH, Schwendimann R; RN4CAST consortium.

BMJ Qual Saf. 2014 Feb;23(2):126-35. doi: 10.1136/bmjqs-2013-002318. Epub 2013 Nov 10.

PMID:
24214796

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