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Items: 19


Culture-Independent Diagnostics for Health Security.

Doggett NA, Mukundan H, Lefkowitz EJ, Slezak TR, Chain PS, Morse S, Anderson K, Hodge DR, Pillai S.

Health Secur. 2016 May-Jun;14(3):122-42. doi: 10.1089/hs.2015.0074.


Targeted amplification for enhanced detection of biothreat agents by next-generation sequencing.

Gardner SN, Frey KG, Redden CL, Thissen JB, Allen JE, Allred AF, Dyer MD, Mokashi VP, Slezak TR.

BMC Res Notes. 2015 Nov 16;8:682. doi: 10.1186/s13104-015-1530-0.


Using populations of human and microbial genomes for organism detection in metagenomes.

Ames SK, Gardner SN, Marti JM, Slezak TR, Gokhale MB, Allen JE.

Genome Res. 2015 Jul;25(7):1056-67. doi: 10.1101/gr.184879.114. Epub 2015 Apr 29.


Ultra-deep mutant spectrum profiling: improving sequencing accuracy using overlapping read pairs.

Chen-Harris H, Borucki MK, Torres C, Slezak TR, Allen JE.

BMC Genomics. 2013 Feb 12;14:96. doi: 10.1186/1471-2164-14-96.


A microbial detection array (MDA) for viral and bacterial detection.

Gardner SN, Jaing CJ, McLoughlin KS, Slezak TR.

BMC Genomics. 2010 Nov 25;11:668. doi: 10.1186/1471-2164-11-668.


Conserved amino acid markers from past influenza pandemic strains.

Allen JE, Gardner SN, Vitalis EA, Slezak TR.

BMC Microbiol. 2009 Apr 22;9:77. doi: 10.1186/1471-2180-9-77.


Multiplexed molecular assay for rapid exclusion of foot-and-mouth disease.

Lenhoff RJ, Naraghi-Arani P, Thissen JB, Olivas J, Carillo AC, Chinn C, Rasmussen M, Messenger SM, Suer LD, Smith SM, Tammero LF, Vitalis EA, Slezak TR, Hullinger PJ, Hindson BJ, Hietala SK, Crossley BM, McBride MT.

J Virol Methods. 2008 Oct;153(1):61-9. doi: 10.1016/j.jviromet.2008.06.015. Epub 2008 Jul 25.


DNA signatures for detecting genetic engineering in bacteria.

Allen JE, Gardner SN, Slezak TR.

Genome Biol. 2008;9(3):R56. doi: 10.1186/gb-2008-9-3-r56. Epub 2008 Mar 18.


Diagnostic evaluation of multiplexed reverse transcription-PCR microsphere array assay for detection of foot-and-mouth and look-alike disease viruses.

Hindson BJ, Reid SM, Baker BR, Ebert K, Ferris NP, Tammero LF, Lenhoff RJ, Naraghi-Arani P, Vitalis EA, Slezak TR, Hullinger PJ, King DP.

J Clin Microbiol. 2008 Mar;46(3):1081-9. doi: 10.1128/JCM.01740-07. Epub 2008 Jan 23.


MannDB - a microbial database of automated protein sequence analyses and evidence integration for protein characterization.

Zhou CL, Lam MW, Smith JR, Zemla AT, Dyer MD, Kuczmarski TA, Vitalis EA, Slezak TR.

BMC Bioinformatics. 2006 Oct 17;7:459.


Cynomolgus macaque as an animal model for severe acute respiratory syndrome.

Lawler JV, Endy TP, Hensley LE, Garrison A, Fritz EA, Lesar M, Baric RS, Kulesh DA, Norwood DA, Wasieloski LP, Ulrich MP, Slezak TR, Vitalis E, Huggins JW, Jahrling PB, Paragas J.

PLoS Med. 2006 May;3(5):e149. Epub 2006 Apr 18.


Draft versus finished sequence data for DNA and protein diagnostic signature development.

Gardner SN, Lam MW, Smith JR, Torres CL, Slezak TR.

Nucleic Acids Res. 2005 Oct 20;33(18):5838-50. Print 2005.


Toward a system of microbial forensics: from sample collection to interpretation of evidence.

Budowle B, Schutzer SE, Ascher MS, Atlas RM, Burans JP, Chakraborty R, Dunn JJ, Fraser CM, Franz DR, Leighton TJ, Morse SA, Murch RS, Ravel J, Rock DL, Slezak TR, Velsko SP, Walsh AC, Walters RA.

Appl Environ Microbiol. 2005 May;71(5):2209-13. Review. No abstract available.


System to assess genome sequencing needs for viral protein diagnostics and therapeutics.

Gardner SN, Kuczmarski TA, Zhou CE, Lam MW, Slezak TR.

J Clin Microbiol. 2005 Apr;43(4):1807-17.


Sequencing needs for viral diagnostics.

Gardner SN, Lam MW, Mulakken NJ, Torres CL, Smith JR, Slezak TR.

J Clin Microbiol. 2004 Dec;42(12):5472-6.


Temporal global changes in gene expression during temperature transition in Yersinia pestis.

Motin VL, Georgescu AM, Fitch JP, Gu PP, Nelson DO, Mabery SL, Garnham JB, Sokhansanj BA, Ott LL, Coleman MA, Elliott JM, Kegelmeyer LM, Wyrobek AJ, Slezak TR, Brubaker RR, Garcia E.

J Bacteriol. 2004 Sep;186(18):6298-305.


Genetic variability of Yersinia pestis isolates as predicted by PCR-based IS100 genotyping and analysis of structural genes encoding glycerol-3-phosphate dehydrogenase (glpD).

Motin VL, Georgescu AM, Elliott JM, Hu P, Worsham PL, Ott LL, Slezak TR, Sokhansanj BA, Regala WM, Brubaker RR, Garcia E.

J Bacteriol. 2002 Feb;184(4):1019-27.


A computer-based data analysis system for enzyme-linked immunosorbent assays.

Slezak TR, Vanderlaan M, Jensen RH.

J Immunol Methods. 1983 Dec 16;65(1-2):83-95.

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