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Items: 10

1.

Systematic Analysis of Drug Targets Confirms Expression in Disease-Relevant Tissues.

Kumar V, Sanseau P, Simola DF, Hurle MR, Agarwal P.

Sci Rep. 2016 Nov 8;6:36205. doi: 10.1038/srep36205.

2.

MLL1 is essential for the senescence-associated secretory phenotype.

Capell BC, Drake AM, Zhu J, Shah PP, Dou Z, Dorsey J, Simola DF, Donahue G, Sammons M, Rai TS, Natale C, Ridky TW, Adams PD, Berger SL.

Genes Dev. 2016 Feb 1;30(3):321-36. doi: 10.1101/gad.271882.115.

3.

Epigenetic (re)programming of caste-specific behavior in the ant Camponotus floridanus.

Simola DF, Graham RJ, Brady CM, Enzmann BL, Desplan C, Ray A, Zwiebel LJ, Bonasio R, Reinberg D, Liebig J, Berger SL.

Science. 2016 Jan 1;351(6268):aac6633. doi: 10.1126/science.aac6633.

4.

Sphingolipids, Transcription Factors, and Conserved Toolkit Genes: Developmental Plasticity in the Ant Cardiocondyla obscurior.

Schrader L, Simola DF, Heinze J, Oettler J.

Mol Biol Evol. 2015 Jun;32(6):1474-86. doi: 10.1093/molbev/msv039.

5.

Social insect genomes exhibit dramatic evolution in gene composition and regulation while preserving regulatory features linked to sociality.

Simola DF, Wissler L, Donahue G, Waterhouse RM, Helmkampf M, Roux J, Nygaard S, Glastad KM, Hagen DE, Viljakainen L, Reese JT, Hunt BG, Graur D, Elhaik E, Kriventseva EV, Wen J, Parker BJ, Cash E, Privman E, Childers CP, Muñoz-Torres MC, Boomsma JJ, Bornberg-Bauer E, Currie CR, Elsik CG, Suen G, Goodisman MA, Keller L, Liebig J, Rawls A, Reinberg D, Smith CD, Smith CR, Tsutsui N, Wurm Y, Zdobnov EM, Berger SL, Gadau J.

Genome Res. 2013 Aug;23(8):1235-47. doi: 10.1101/gr.155408.113.

6.

Mechanisms and dynamics of orphan gene emergence in insect genomes.

Wissler L, Gadau J, Simola DF, Helmkampf M, Bornberg-Bauer E.

Genome Biol Evol. 2013;5(2):439-55. doi: 10.1093/gbe/evt009.

7.

A chromatin link to caste identity in the carpenter ant Camponotus floridanus.

Simola DF, Ye C, Mutti NS, Dolezal K, Bonasio R, Liebig J, Reinberg D, Berger SL.

Genome Res. 2013 Mar;23(3):486-96. doi: 10.1101/gr.148361.112.

8.

The genomic impact of 100 million years of social evolution in seven ant species.

Gadau J, Helmkampf M, Nygaard S, Roux J, Simola DF, Smith CR, Suen G, Wurm Y, Smith CD.

Trends Genet. 2012 Jan;28(1):14-21. doi: 10.1016/j.tig.2011.08.005. Review.

9.

Sniper: improved SNP discovery by multiply mapping deep sequenced reads.

Simola DF, Kim J.

Genome Biol. 2011 Jun 20;12(6):R55. doi: 10.1186/gb-2011-12-6-r55.

10.

Heterochronic evolution reveals modular timing changes in budding yeast transcriptomes.

Simola DF, Francis C, Sniegowski PD, Kim J.

Genome Biol. 2010;11(10):R105. doi: 10.1186/gb-2010-11-10-r105.

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