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Items: 17


DNA metabarcoding for high-throughput monitoring of estuarine macrobenthic communities.

Lobo J, Shokralla S, Costa MH, Hajibabaei M, Costa FO.

Sci Rep. 2017 Nov 15;7(1):15618. doi: 10.1038/s41598-017-15823-6.


Altered intestinal microbiota-host mitochondria crosstalk in new onset Crohn's disease.

Mottawea W, Chiang CK, Mühlbauer M, Starr AE, Butcher J, Abujamel T, Deeke SA, Brandel A, Zhou H, Shokralla S, Hajibabaei M, Singleton R, Benchimol EI, Jobin C, Mack DR, Figeys D, Stintzi A.

Nat Commun. 2016 Nov 23;7:13419. doi: 10.1038/ncomms13419.


Large-Scale Monitoring of Plants through Environmental DNA Metabarcoding of Soil: Recovery, Resolution, and Annotation of Four DNA Markers.

Fahner NA, Shokralla S, Baird DJ, Hajibabaei M.

PLoS One. 2016 Jun 16;11(6):e0157505. doi: 10.1371/journal.pone.0157505. eCollection 2016.


Quorum Sensing Inhibiting Activity of Streptomyces coelicoflavus Isolated from Soil.

Hassan R, Shaaban MI, Abdel Bar FM, El-Mahdy AM, Shokralla S.

Front Microbiol. 2016 May 13;7:659. doi: 10.3389/fmicb.2016.00659. eCollection 2016.


Ribosomal DNA and Plastid Markers Used to Sample Fungal and Plant Communities from Wetland Soils Reveals Complementary Biotas.

Porter TM, Shokralla S, Baird D, Golding GB, Hajibabaei M.

PLoS One. 2016 Jan 5;11(1):e0142759. doi: 10.1371/journal.pone.0142759. eCollection 2016.


A DNA Mini-Barcoding System for Authentication of Processed Fish Products.

Shokralla S, Hellberg RS, Handy SM, King I, Hajibabaei M.

Sci Rep. 2015 Oct 30;5:15894. doi: 10.1038/srep15894.


Large-Scale Biomonitoring of Remote and Threatened Ecosystems via High-Throughput Sequencing.

Gibson JF, Shokralla S, Curry C, Baird DJ, Monk WA, King I, Hajibabaei M.

PLoS One. 2015 Oct 21;10(10):e0138432. doi: 10.1371/journal.pone.0138432. eCollection 2015.


Discrimination of grasshopper (Orthoptera: Acrididae) diet and niche overlap using next-generation sequencing of gut contents.

McClenaghan B, Gibson JF, Shokralla S, Hajibabaei M.

Ecol Evol. 2015 Aug;5(15):3046-55. doi: 10.1002/ece3.1585. Epub 2015 Jul 7.


Massively parallel multiplex DNA sequencing for specimen identification using an Illumina MiSeq platform.

Shokralla S, Porter TM, Gibson JF, Dobosz R, Janzen DH, Hallwachs W, Golding GB, Hajibabaei M.

Sci Rep. 2015 Apr 17;5:9687. doi: 10.1038/srep09687.


Simultaneous assessment of the macrobiome and microbiome in a bulk sample of tropical arthropods through DNA metasystematics.

Gibson J, Shokralla S, Porter TM, King I, van Konynenburg S, Janzen DH, Hallwachs W, Hajibabaei M.

Proc Natl Acad Sci U S A. 2014 Jun 3;111(22):8007-12. doi: 10.1073/pnas.1406468111. Epub 2014 May 7.


Next-generation DNA barcoding: using next-generation sequencing to enhance and accelerate DNA barcode capture from single specimens.

Shokralla S, Gibson JF, Nikbakht H, Janzen DH, Hallwachs W, Hajibabaei M.

Mol Ecol Resour. 2014 Sep;14(5):892-901. doi: 10.1111/1755-0998.12236. Epub 2014 Feb 19.


Assessing biodiversity of a freshwater benthic macroinvertebrate community through non-destructive environmental barcoding of DNA from preservative ethanol.

Hajibabaei M, Spall JL, Shokralla S, van Konynenburg S.

BMC Ecol. 2012 Dec 23;12:28. doi: 10.1186/1472-6785-12-28.


Pyrosequencing for mini-barcoding of fresh and old museum specimens.

Shokralla S, Zhou X, Janzen DH, Hallwachs W, Landry JF, Jacobus LM, Hajibabaei M.

PLoS One. 2011;6(7):e21252. doi: 10.1371/journal.pone.0021252. Epub 2011 Jul 27.


Environmental barcoding: a next-generation sequencing approach for biomonitoring applications using river benthos.

Hajibabaei M, Shokralla S, Zhou X, Singer GA, Baird DJ.

PLoS One. 2011 Apr 13;6(4):e17497. doi: 10.1371/journal.pone.0017497.


High throughput automated allele frequency estimation by pyrosequencing.

Doostzadeh J, Shokralla S, Absalan F, Jalili R, Mohandessi S, Langston JW, Davis RW, Ronaghi M, Gharizadeh B.

PLoS One. 2008 Jul 16;3(7):e2693. doi: 10.1371/journal.pone.0002693.


A pyrosequencing-tailored nucleotide barcode design unveils opportunities for large-scale sample multiplexing.

Parameswaran P, Jalili R, Tao L, Shokralla S, Gharizadeh B, Ronaghi M, Fire AZ.

Nucleic Acids Res. 2007;35(19):e130. Epub 2007 Oct 11.

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