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Phylogenetics of Lophotrochozoan bHLH Genes and the Evolution of Lineage-Specific Gene Duplicates.

Bao Y, Xu F, Shimeld SM.

Genome Biol Evol. 2017 Apr 1;9(4):869-886. doi: 10.1093/gbe/evx047.


Cerberus-Nodal-Lefty-Pitx signaling cascade controls left-right asymmetry in amphioxus.

Li G, Liu X, Xing C, Zhang H, Shimeld SM, Wang Y.

Proc Natl Acad Sci U S A. 2017 Apr 4;114(14):3684-3689. doi: 10.1073/pnas.1620519114. Epub 2017 Mar 20.


Identification of genes for engineering the male germline of Aedes aegypti and Ceratitis capitata.

Sutton ER, Yu Y, Shimeld SM, White-Cooper H, Alphey AL.

BMC Genomics. 2016 Nov 21;17(1):948.


Insect transformation with piggyBac: getting the number of injections just right.

Gregory M, Alphey L, Morrison NI, Shimeld SM.

Insect Mol Biol. 2016 Jun;25(3):259-71. doi: 10.1111/imb.12220. Epub 2016 Mar 30.


Identification of molecular signatures specific for distinct cranial sensory ganglia in the developing chick.

Patthey C, Clifford H, Haerty W, Ponting CP, Shimeld SM, Begbie J.

Neural Dev. 2016 Jan 27;11:3. doi: 10.1186/s13064-016-0057-y.


Molecular basis of canalization in an ascidian species complex adapted to different thermal conditions.

Sato A, Kawashima T, Fujie M, Hughes S, Satoh N, Shimeld SM.

Sci Rep. 2015 Nov 18;5:16717. doi: 10.1038/srep16717.


Draft genome assemblies and predicted microRNA complements of the intertidal lophotrochozoans Patella vulgata (Mollusca, Patellogastropoda) and Spirobranchus (Pomatoceros) lamarcki (Annelida, Serpulida).

Kenny NJ, Namigai EK, Marlétaz F, Hui JH, Shimeld SM.

Mar Genomics. 2015 Dec;24 Pt 2:139-46. doi: 10.1016/j.margen.2015.07.004. Epub 2015 Aug 28.


Characterization of two neurogenin genes from the brook lamprey lampetra planeri and their expression in the lamprey nervous system.

Lara-Ramírez R, Patthey C, Shimeld SM.

Dev Dyn. 2015 Mar 23. doi: 10.1002/dvdy.24273. [Epub ahead of print]


The Lophotrochozoan TGF-β signalling cassette - diversification and conservation in a key signalling pathway.

Kenny NJ, Namigai EK, Dearden PK, Hui JH, Grande C, Shimeld SM.

Int J Dev Biol. 2014;58(6-8):533-49. doi: 10.1387/ijdb.140080nk.


Dissection of a Ciona regulatory element reveals complexity of cross-species enhancer activity.

Chen WC, Pauls S, Bacha J, Elgar G, Loose M, Shimeld SM.

Dev Biol. 2014 Jun 15;390(2):261-72. doi: 10.1016/j.ydbio.2014.03.013. Epub 2014 Mar 28.


Genomic sequence and experimental tractability of a new decapod shrimp model, Neocaridina denticulata.

Kenny NJ, Sin YW, Shen X, Zhe Q, Wang W, Chan TF, Tobe SS, Shimeld SM, Chu KH, Hui JH.

Mar Drugs. 2014 Mar 11;12(3):1419-37. doi: 10.3390/md12031419.


Right across the tree of life: the evolution of left-right asymmetry in the Bilateria.

Namigai EK, Kenny NJ, Shimeld SM.

Genesis. 2014 Jun;52(6):458-70. doi: 10.1002/dvg.22748. Epub 2014 Feb 26. Review.


The evolutionary history of vertebrate cranial placodes--I: cell type evolution.

Patthey C, Schlosser G, Shimeld SM.

Dev Biol. 2014 May 1;389(1):82-97. doi: 10.1016/j.ydbio.2014.01.017. Epub 2014 Feb 1. Review.


The evolutionary history of vertebrate cranial placodes II. Evolution of ectodermal patterning.

Schlosser G, Patthey C, Shimeld SM.

Dev Biol. 2014 May 1;389(1):98-119. doi: 10.1016/j.ydbio.2014.01.019. Epub 2014 Feb 1. Review.


Parallel evolution of chordate cis-regulatory code for development.

Doglio L, Goode DK, Pelleri MC, Pauls S, Frabetti F, Shimeld SM, Vavouri T, Elgar G.

PLoS Genet. 2013 Nov;9(11):e1003904. doi: 10.1371/journal.pgen.1003904. Epub 2013 Nov 21. Erratum in: PLoS Genet. 2013 Nov;9(11). doi:10.1371/annotation/1fc82a4b-f9ea-461a-8987-1152078688e4.


Evolution of bilaterian central nervous systems: a single origin?

Holland LZ, Carvalho JE, Escriva H, Laudet V, Schubert M, Shimeld SM, Yu JK.

Evodevo. 2013 Oct 7;4(1):27. doi: 10.1186/2041-9139-4-27.


Evolutionary conservation of the placodal transcriptional network during sexual and asexual development in chordates.

Gasparini F, Degasperi V, Shimeld SM, Burighel P, Manni L.

Dev Dyn. 2013 Jun;242(6):752-66. doi: 10.1002/dvdy.23957. Epub 2013 Apr 9.


Additive multiple k-mer transcriptome of the keelworm Pomatoceros lamarckii (Annelida; Serpulidae) reveals annelid trochophore transcription factor cassette.

Kenny NJ, Shimeld SM.

Dev Genes Evol. 2012 Nov;222(6):325-39. doi: 10.1007/s00427-012-0416-6. Epub 2012 Oct 9.


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