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Items: 1 to 20 of 33


Whole-genome analyses resolve early branches in the tree of life of modern birds.

Jarvis ED, Mirarab S, Aberer AJ, Li B, Houde P, Li C, Ho SY, Faircloth BC, Nabholz B, Howard JT, Suh A, Weber CC, da Fonseca RR, Li J, Zhang F, Li H, Zhou L, Narula N, Liu L, Ganapathy G, Boussau B, Bayzid MS, Zavidovych V, Subramanian S, Gabaldón T, Capella-Gutiérrez S, Huerta-Cepas J, Rekepalli B, Munch K, Schierup M, Lindow B, Warren WC, Ray D, Green RE, Bruford MW, Zhan X, Dixon A, Li S, Li N, Huang Y, Derryberry EP, Bertelsen MF, Sheldon FH, Brumfield RT, Mello CV, Lovell PV, Wirthlin M, Schneider MP, Prosdocimi F, Samaniego JA, Vargas Velazquez AM, Alfaro-Núñez A, Campos PF, Petersen B, Sicheritz-Ponten T, Pas A, Bailey T, Scofield P, Bunce M, Lambert DM, Zhou Q, Perelman P, Driskell AC, Shapiro B, Xiong Z, Zeng Y, Liu S, Li Z, Liu B, Wu K, Xiao J, Yinqi X, Zheng Q, Zhang Y, Yang H, Wang J, Smeds L, Rheindt FE, Braun M, Fjeldsa J, Orlando L, Barker FK, Jønsson KA, Johnson W, Koepfli KP, O'Brien S, Haussler D, Ryder OA, Rahbek C, Willerslev E, Graves GR, Glenn TC, McCormack J, Burt D, Ellegren H, Alström P, Edwards SV, Stamatakis A, Mindell DP, Cracraft J, Braun EL, Warnow T, Jun W, Gilbert MT, Zhang G.

Science. 2014 Dec 12;346(6215):1320-31. doi: 10.1126/science.1253451.


Parsimony and model-based analyses of indels in avian nuclear genes reveal congruent and incongruent phylogenetic signals.

Yuri T, Kimball RT, Harshman J, Bowie RC, Braun MJ, Chojnowski JL, Han KL, Hackett SJ, Huddleston CJ, Moore WS, Reddy S, Sheldon FH, Steadman DW, Witt CC, Braun EL.

Biology (Basel). 2013 Mar 13;2(1):419-44. doi: 10.3390/biology2010419.


Genetic divergence and population demography of the Hainan endemic Black-throated Laughingthrush (Aves: Timaliidae, Garrulax chinensis monachus) and adjacent mainland subspecies.

Wu Y, Huang J, Zhang M, Luo S, Zhang Y, Lei F, Sheldon FH, Zou F.

Mol Phylogenet Evol. 2012 Nov;65(2):482-9. doi: 10.1016/j.ympev.2012.07.005. Epub 2012 Jul 20.


Species trees for the tree swallows (Genus Tachycineta): an alternative phylogenetic hypothesis to the mitochondrial gene tree.

Dor R, Carling MD, Lovette IJ, Sheldon FH, Winkler DW.

Mol Phylogenet Evol. 2012 Oct;65(1):317-22. doi: 10.1016/j.ympev.2012.06.020. Epub 2012 Jun 30.


Molecular phylogeny and insular biogeography of the lowland tailorbirds of Southeast Asia (Cisticolidae: Orthotomus).

Sheldon FH, Oliveros CH, Taylor SS, McKay B, Lim HC, Abdul Rahman M, Mays H, Moyle RG.

Mol Phylogenet Evol. 2012 Oct;65(1):54-63. doi: 10.1016/j.ympev.2012.05.023. Epub 2012 Jun 9.


Multilocus analysis of the evolutionary dynamics of rainforest bird populations in Southeast Asia.

Lim HC, Sheldon FH.

Mol Ecol. 2011 Aug;20(16):3414-38. doi: 10.1111/j.1365-294X.2011.05190.x. Epub 2011 Jul 21.


Homoplastic microinversions and the avian tree of life.

Braun EL, Kimball RT, Han KL, Iuhasz-Velez NR, Bonilla AJ, Chojnowski JL, Smith JV, Bowie RC, Braun MJ, Hackett SJ, Harshman J, Huddleston CJ, Marks BD, Miglia KJ, Moore WS, Reddy S, Sheldon FH, Witt CC, Yuri T.

BMC Evol Biol. 2011 May 25;11:141. doi: 10.1186/1471-2148-11-141.


Are transposable element insertions homoplasy free?: an examination using the avian tree of life.

Han KL, Braun EL, Kimball RT, Reddy S, Bowie RC, Braun MJ, Chojnowski JL, Hackett SJ, Harshman J, Huddleston CJ, Marks BD, Miglia KJ, Moore WS, Sheldon FH, Steadman DW, Witt CC, Yuri T.

Syst Biol. 2011 May;60(3):375-86. doi: 10.1093/sysbio/syq100. Epub 2011 Feb 8. No abstract available.


Phylogeny and biogeography of the Asian trogons (Aves: Trogoniformes) inferred from nuclear and mitochondrial DNA sequences.

Hosner PA, Sheldon FH, Lim HC, Moyle RG.

Mol Phylogenet Evol. 2010 Dec;57(3):1219-25. doi: 10.1016/j.ympev.2010.09.008. Epub 2010 Sep 19.


Revisiting Wallace's haunt: coalescent simulations and comparative niche modeling reveal historical mechanisms that promoted avian population divergence in the Malay Archipelago.

Lim HC, Rahman MA, Lim SL, Moyle RG, Sheldon FH.

Evolution. 2011 Feb;65(2):321-34. doi: 10.1111/j.1558-5646.2010.01105.x. Epub 2010 Sep 29.


Towards an assessment of character interdependence in avian RNA phylogenetics: a general secondary structure model for the avian mitochondrial 16S rRNA.

do Amaral FR, Sheldon FH, Wajntal A.

Mol Phylogenet Evol. 2010 Jul;56(1):498-506. doi: 10.1016/j.ympev.2010.03.016. Epub 2010 Mar 17. No abstract available.


Phylogeny of the genus Hirundo and the Barn Swallow subspecies complex.

Dor R, Safran RJ, Sheldon FH, Winkler DW, Lovette IJ.

Mol Phylogenet Evol. 2010 Jul;56(1):409-18. doi: 10.1016/j.ympev.2010.02.008. Epub 2010 Feb 10.


Patterns and processes of diversification in a widespread and ecologically diverse avian group, the buteonine hawks (Aves, Accipitridae).

do Amaral FR, Sheldon FH, Gamauf A, Haring E, Riesing M, Silveira LF, Wajntal A.

Mol Phylogenet Evol. 2009 Dec;53(3):703-15. doi: 10.1016/j.ympev.2009.07.020. Epub 2009 Jul 25.


A well-tested set of primers to amplify regions spread across the avian genome.

Kimball RT, Braun EL, Barker FK, Bowie RC, Braun MJ, Chojnowski JL, Hackett SJ, Han KL, Harshman J, Heimer-Torres V, Holznagel W, Huddleston CJ, Marks BD, Miglia KJ, Moore WS, Reddy S, Sheldon FH, Smith JV, Witt CC, Yuri T.

Mol Phylogenet Evol. 2009 Mar;50(3):654-60. doi: 10.1016/j.ympev.2008.11.018. Epub 2008 Dec 6. No abstract available.


Phylogenomic evidence for multiple losses of flight in ratite birds.

Harshman J, Braun EL, Braun MJ, Huddleston CJ, Bowie RC, Chojnowski JL, Hackett SJ, Han KL, Kimball RT, Marks BD, Miglia KJ, Moore WS, Reddy S, Sheldon FH, Steadman DW, Steppan SJ, Witt CC, Yuri T.

Proc Natl Acad Sci U S A. 2008 Sep 9;105(36):13462-7. doi: 10.1073/pnas.0803242105. Epub 2008 Sep 2.


A phylogenomic study of birds reveals their evolutionary history.

Hackett SJ, Kimball RT, Reddy S, Bowie RC, Braun EL, Braun MJ, Chojnowski JL, Cox WA, Han KL, Harshman J, Huddleston CJ, Marks BD, Miglia KJ, Moore WS, Sheldon FH, Steadman DW, Witt CC, Yuri T.

Science. 2008 Jun 27;320(5884):1763-8. doi: 10.1126/science.1157704.


Molecular phylogenetic analysis of the Grey-cheeked Fulvetta (Alcippe morrisonia) of China and Indochina: a case of remarkable genetic divergence in a "species".

Zou F, Lim HC, Marks BD, Moyle RG, Sheldon FH.

Mol Phylogenet Evol. 2007 Jul;44(1):165-74. Epub 2006 Dec 20. Erratum in: Mol Phylogenet Evol. 2008 Oct;49(1):410.


Reconsideration of the phylogenetic relationships of the enigmatic Bornean Bristlehead (Pityriasis gymnocephala).

Moyle RG, Cracraft J, Lakim M, Nais J, Sheldon FH.

Mol Phylogenet Evol. 2006 Jun;39(3):893-8. Epub 2006 Mar 9. No abstract available.


Academy of Natural Sciences: job cuts.

Sheldon FH, Remsen JV, Brumfield RT.

Science. 2005 Mar 11;307(5715):1560. No abstract available.


Academy of Natural Sciences: Job Cuts.

Lapolla JS, Sheldon FH, Remsen JV, Brumfield RT, Baker DJ.

Science. 2005 Mar 11;307(5715):1560b. No abstract available.

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